Paraburkholderia dioscoreae: PDMSB3_2188.1
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Entry
PDMSB3_2188.1 CDS
T08115
Name
(GenBank) Putative diguanylate cyclase/phosphodiesterase(GGDEF & EAL domains) with PAS/PAC sensor(S)
Organism
pdio
Paraburkholderia dioscoreae
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
HAMP
PAS_8
PAS
PAS_4
PAS_3
Cas10-Cmr2_palm2
Motif
Other DBs
NCBI-ProteinID:
VVD33472
UniProt:
A0A5Q4ZUW0
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Position
II:2270816..2273995
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AA seq
1059 aa
AA seq
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MKRNLFFRFLGRLRVGRKLLLIYLLDLSAVLYISGILIHEKYIAIDFSDKELVGNAYVAA
VHDALVDFALAGAGKPQTPAQLQRTASWLADAERRYGANMQSAEINARVLAALTASAAPH
ASAATVDGGLEATRELVTRVGNQSNLILDPDLDSYYSMSLSILRYPELLSDVNRIGRHLH
DAGASLRTARMSHDEMRTRYLVLEGQLDAVLQGLRSDYAEAAATNATLTRTIGPPITHML
AAIDAYRRVAGAAVDAGSDAATLTALDAAQQGVVMSVSDAWSATGNQLERLLHERVRGLF
ERMWLHLGTALFLLCAILSMVYFVAQQISRPLRQLARVMDTVRRTGDHSLRARWHSQDEI
GQLVRGFNDMLAQLDRERDVQKELAATARASAAQYALVEATPVPMVVTAIPGHEVLHANK
PALYWLNGCTVDPWAVGLDSEVRARFFQQLSDREAVDEFEVHWKAAKESTWAMLSARRLD
FQGRDAVLTAFTPINQIKLMEQRLELWGKVFEASSEAILILDAQRRLVTANASFYRATGY
RADNVTGKEPAFLFGTQDHDDILPAVIDSVDRLSVWHGEAHVRRRAGSDYPAWLMVSAVR
DRRANLSHYICTLIDITDRKKSEARIQFLAEHDVLTELPNRELFVKRLGVVLGNARRTGQ
RVAVLFIDLDRFKNINDSLGHHIGDSLLRSVSRRLLQAVRTNDTVSRLGGDEFTVILNSV
SNAADVTRTIEERLLPLVRQPHEVGGVTLQVSCSVGVALFPDDGEDIETLMQNADAAMYQ
AKGAGRNLVKFFAPDIAERTRYRLTLEACLRSAITMHEFRLEYQPCVDAHTGELVAVEGL
LRWNSPQIGIVSPAQFIPVAEDTRLIIPIGAWVIDEACQQIAAWDAEGLTPLRVSINLSA
IQLRDPDLIGTLADSLARHGVAPWRLELEITETVLMDNAENYLTMINAIRALGVKLSLDD
FGIGYSSLSYLNRFPLDRLKIDRAFVLDMLDARADLAIVRAIIELGHELGLRVVAEGVES
EHQARILRTIGCDELQGFLFSKALSPADLWSWTNARKVA
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcaacctgttcttccggtttctcgggcgcctgcgcgtcggccgcaagctgctg
ctgatctatctgctcgacctgagcgcggtgctgtatatcagcggcatcctgatccacgag
aaatacattgcgatcgacttctccgacaaggagctggtcggcaacgcctacgtcgcggcc
gtgcacgacgcgctcgtcgactttgcgctcgccggggccggaaaaccgcagacgccggcc
caattgcaacgcacggcgagctggctcgccgacgcggagcgccgctatggcgcaaacatg
cagagcgccgaaatcaacgcgcgcgtgctagcggccctcacggccagcgccgcgccccat
gcgagcgccgcgaccgtggacggcggcctcgaagcaacccgcgaactggtgacgcgggtc
ggcaaccagtcgaacctgattctggacccggacctcgacagctactactcgatgtcgctg
tcgatcctgcgctatccggagctgctcagcgacgtcaaccggatcggccgccatctgcac
gatgccggcgcgagtcttcgcaccgcacggatgagccacgacgagatgcggacccgctac
ctcgtgctggaaggacagctcgacgcggtattgcaggggctgcgctccgactatgcggaa
gccgcggccaccaacgccacgctgaccagaaccatcggtccaccgatcacgcatatgctc
gccgcgatcgacgcgtatcgccgcgtggccggcgccgcggtcgatgccggctcggatgcc
gccacgctcacggcgctcgatgccgcgcagcagggcgtggtgatgagcgtgagcgacgcg
tggagcgcgaccggcaatcagctcgaaagactgttgcatgaacgcgtgcgcggcctcttc
gagcggatgtggctgcacctcggcaccgcgttgttcctgctgtgcgcgatcctcagcatg
gtgtatttcgtcgcgcagcagatttcgcggccactgcgccagctcgcgcgcgtgatggac
acggtgcggcgtacgggcgaccattcgctgcgcgccaggtggcatagccaggacgagatc
ggccagctcgtgcgaggcttcaacgacatgctcgcgcaactcgatcgcgagcgcgacgtg
cagaaggaactcgcggcgacagcgcgcgcctcggccgcgcagtacgcactggtcgaggcg
actccggtgccgatggtcgtcacggcgatcccggggcatgaagtgctgcacgcgaacaag
cccgcgctttactggctgaatggctgcacggtcgatccgtgggccgtcggcctcgactcg
gaggtgcgcgcgcgcttcttccagcagctctccgaccgcgaggcggtcgacgaattcgag
gtgcactggaaggccgccaaagaatccacctgggcaatgctgtcggcgcggcgtctcgac
ttccaggggcgcgacgccgtgctgaccgccttcacaccgatcaaccagatcaagctgatg
gagcagcgcctcgaattgtggggcaaggtgttcgaggcatcgtccgaagccattctgatt
ctcgacgcgcaacggcggctcgtgaccgcaaacgcatcgttctatcgcgcgaccggctat
cgcgccgacaacgtgacgggcaaggaacccgctttcctgttcggcacgcaggaccacgac
gacattcttccggccgtgatcgattccgtcgaccgcctgagcgtatggcatggcgaagcg
cacgtacggcggcgcgcgggcagcgactatccggcgtggctgatggtgagcgcggtgcgc
gaccggcgcgcgaacctgtcgcactacatctgcacgctgatcgacatcacggaccgcaag
aagagcgaggcgcgcatccagttcctcgccgaacacgacgtgctgacggagttgccgaac
cgcgagctgttcgtgaagcgactgggcgtcgtgctcggcaacgcgcgccgcacggggcag
cgcgtcgcggtgctgttcatcgacctcgaccgcttcaagaacatcaacgattcgctgggc
catcacatcggcgacagccttctgcgctcggtctcgcgacgcctgttgcaggccgtgcgc
accaacgacaccgtaagccggctcggcggcgacgaattcacggtgatcctgaacagcgtc
agcaacgcggcggacgtcacgcgcacgatcgaggagcgtttgctgccgctcgtgcgccag
ccgcacgaggtcggcggcgtcacgctgcaggtgtcgtgcagtgtgggcgtggcgctgttc
cccgacgacggcgaggacatcgagacgctgatgcagaacgccgacgccgcgatgtaccag
gcgaagggcgccgggcgcaacctcgtcaagttcttcgcgcccgacatcgccgagcgcacc
cgctaccggctgacgctcgaagcctgcctgcgcagcgcgatcaccatgcacgagttccgg
ctcgaataccagccgtgcgtcgatgcgcatacgggcgaactggtcgccgtagaaggcctg
ctgcgctggaacagcccgcagatcggcatcgtctcgcccgcgcagttcattccggtcgcg
gaagatacgcgcctcatcattccgatcggcgcgtgggtgatagacgaagcctgccagcag
atcgccgcgtgggacgccgaaggtctgacgccgctacgtgtttcgatcaacctgtcggcg
atccagttgcgcgatccggacctgatcggcacgctcgcggacagtctcgcgcggcatggc
gtcgccccgtggcggctcgaactcgagatcaccgaaaccgtgctgatggacaacgcggag
aactatctcaccatgatcaacgcgatccgcgcgctcggggtcaagctctcgctcgacgat
ttcggcatcggctactcgagcctcagctatctgaaccgttttcccctcgaccggctcaag
atcgatcgggcgttcgtgctcgacatgctcgatgcccgcgcggacctcgccatcgtccgc
gcgatcatcgaactggggcatgaactgggtctgcgggtggtcgccgagggtgtcgagagc
gaacatcaggcgcgcatcctgcgcacgatcggttgcgacgaactgcagggcttcctgttc
tcgaaagcgttgtcgccggccgatttgtggtcatggacgaacgcgcgcaaggtggcgtga
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