Paraburkholderia dioscoreae: PDMSB3_2495.1
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Entry
PDMSB3_2495.1 CDS
T08115
Symbol
hupB
Name
(GenBank) HU, DNA-binding transcriptional regulator, beta subunit
KO
K03530
DNA-binding protein HU-beta
Organism
pdio
Paraburkholderia dioscoreae
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdio03032
]
PDMSB3_2495.1 (hupB)
03036 Chromosome and associated proteins [BR:
pdio03036
]
PDMSB3_2495.1 (hupB)
03400 DNA repair and recombination proteins [BR:
pdio03400
]
PDMSB3_2495.1 (hupB)
DNA replication proteins [BR:
pdio03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
PDMSB3_2495.1 (hupB)
Chromosome and associated proteins [BR:
pdio03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
PDMSB3_2495.1 (hupB)
DNA repair and recombination proteins [BR:
pdio03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
PDMSB3_2495.1 (hupB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
BclA_C
DUF2267
Urease_beta
HU-CCDC81_bac_2
Motif
Other DBs
NCBI-ProteinID:
VVD33779
UniProt:
A0A5Q4ZNI3
LinkDB
All DBs
Position
II:complement(2583594..2583872)
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AA seq
92 aa
AA seq
DB search
MNKQELVDAVAAKTGASKAAAGEAIDAFIGAVTAAVTKGDTVQLIGFGSFSTGARAARVG
RNPATGAEIQIAAAKTVKFTAGKAFKDAVNGA
NT seq
279 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagcaggaactggtggatgcagttgccgcgaagaccggcgcgagcaaggcggcc
gccggcgaggcgatcgatgcgtttatcggcgcggtcaccgcggccgtcacgaaaggtgac
accgtgcagctgatcggctttggatcgttctcgacgggggcgcgtgccgcgcgcgtcggc
cgcaatccggcgaccggcgccgaaatccagatcgcggctgcgaagacggtgaagttcacg
gcgggcaaggcgttcaaggatgccgtgaacggcgcctga
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