Paraburkholderia dioscoreae: PDMSB3_2855
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Entry
PDMSB3_2855 CDS
T08115
Symbol
recJ
Name
(GenBank) ssDNA exonuclease, 5' --> 3'-specific
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pdio
Paraburkholderia dioscoreae
Pathway
pdio03410
Base excision repair
pdio03430
Mismatch repair
pdio03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PDMSB3_2855 (recJ)
03430 Mismatch repair
PDMSB3_2855 (recJ)
03440 Homologous recombination
PDMSB3_2855 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdio03400
]
PDMSB3_2855 (recJ)
DNA repair and recombination proteins [BR:
pdio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PDMSB3_2855 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PDMSB3_2855 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PDMSB3_2855 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
VVD29311
UniProt:
A0A5Q4YTK7
LinkDB
All DBs
Position
I:2920012..2921718
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AA seq
568 aa
AA seq
DB search
MTRIVTRAASPVDAEILTRHGLHPVLARLYAARGVCMPDEIETGLARLVPPVALKGCEDA
AALLADAIQSKRRMLVVADYDCDGATACAVAVRGLRMFGGRIEYLVPNRFEYGYGLTPEI
VALAARNAAGKPDLLITVDNGIASVDGVQAANALGIDVLVTDHHLPGDELPPARAIVNPN
QPGCTFPSKCIAGVGVMFYVLLALRAELRRRGAFNDNFPEPRLDGLLDLVALGTVADVVK
LDGNNRVLVAQGLQRIRKGKMQPGIAALFRAAARDARSASGFDLGFALGPRLNAAGRLSD
MSLGIECLTTDDIGRAWDLAQQLDTMNRERREIEAGMQQQALDDLSAIDPDGTTTITLFN
PDWHQGVIGIVAGRLKEKFHRPSFTFALADDSGQTVKGSGRSIAGFHLRDALDLISKREP
GLIVKFGGHAMAAGLTLAAADVPRFTAAFEAVGREWLSEEALSRTVETDGELEDAYFTPQ
FVEMLDAAVWGQGFPAPVFSGEFDIVSQALVKDKHLKLQLVRGRQRFNAIWFNHTDTLPA
RTTVAYRLASDTWNGVSRVQLIVEHAAS
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgacccgaatcgttacgcgcgccgcgtcccccgtcgacgccgaaatcctcacccgccac
ggcctgcatccggtgctcgcgcgcctctacgcggcgcgcggcgtgtgcatgcccgacgaa
atcgaaaccggcctcgcgcggctcgtgccgcccgtcgcgctcaagggttgcgaagacgcc
gccgccctgctcgccgacgcaatccagagcaaacgccgcatgctggtggtcgccgactac
gattgcgacggcgccaccgcctgcgcggtcgccgtgcgtggcctgcgcatgttcggcggc
cggatcgagtatctggtgccgaaccgtttcgagtacggctatggcctgacgccggagatc
gtcgcgctggccgcccgcaacgcggcgggcaagccggatctgctgatcaccgtggataac
ggcattgccagcgtggacggcgtgcaagcggccaacgcgctcggcatcgacgtgctggtt
accgatcaccacctgcccggcgacgaactgccgcccgcccgcgcgatcgtcaatccgaac
cagccgggctgcacgttcccgagcaaatgcatcgcgggcgtcggcgtgatgttttacgtg
ctgctcgcgttgcgcgcagaattgcgccgccgtggcgcgttcaacgataactttcccgag
ccgcgcctcgacggcctgctcgatctggtcgcgctcggtacggtcgcggacgtggtcaag
ctcgacggcaacaaccgcgtgctggtcgcgcagggtctgcagcgcatccgcaaaggcaag
atgcagccgggcatcgccgcgctgtttcgcgccgccgcgcgcgacgcccgcagcgcgtcg
ggcttcgatctcggcttcgcgctcgggccgcgcctgaacgcggcgggccggctgtcggac
atgtcgctcgggatcgaatgcctgactaccgacgacatcggccgcgcgtgggatctcgcg
cagcaactcgacacgatgaaccgcgaacgccgcgaaatcgaagccggcatgcagcagcag
gcgctcgacgacctctcggcgatcgaccccgacggcaccaccaccatcacgctgttcaat
cccgactggcatcagggcgtgatcggcatcgtggcggggcggctgaaagagaaattccac
cggccctcgttcaccttcgcgctcgccgacgacagcggccagaccgtcaaaggctcgggc
cgctcgatcgcgggcttccatctgcgcgacgcgctcgatctgatctcgaagcgcgagccg
ggcctgatcgtcaagttcggcggccacgcaatggccgcgggcctcacgctcgccgccgcc
gacgtgccgcgcttcaccgccgcgttcgaagcggtcggccgcgaatggctgtccgaagaa
gcgctctcgcgcacggtggaaaccgacggcgaactcgaagacgcctacttcacgccgcaa
ttcgtcgaaatgctcgacgcggccgtgtggggccaaggctttccggcgccggtgttttcg
ggcgaattcgacatcgtctcgcaggcgctggtgaaggacaaacacctgaagctgcaactc
gtgcgcggccgccagcgcttcaacgcgatctggttcaatcacaccgacaccctgcccgcc
cgcaccacggtcgcctaccgcctcgcgagcgacacgtggaacggcgtgtcgcgcgtgcaa
ctgatcgttgagcacgcggctagctga
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