Paraburkholderia dioscoreae: PDMSB3_2911
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Entry
PDMSB3_2911 CDS
T08115
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pdio
Paraburkholderia dioscoreae
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdio03019
]
PDMSB3_2911 (hrpA)
Enzymes [BR:
pdio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PDMSB3_2911 (hrpA)
Messenger RNA biogenesis [BR:
pdio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PDMSB3_2911 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
nSTAND3
T2SSE
nSTAND_NTPase5
NACHT
TP_methylase
PhoH
Motif
Other DBs
NCBI-ProteinID:
VVD29367
UniProt:
A0A5Q4ZDM0
LinkDB
All DBs
Position
I:complement(2984552..2988886)
Genome browser
AA seq
1444 aa
AA seq
DB search
MSNVPKSPAAANENPAPAADQAKAGDAKRRNAQDAERNAPDTARESRRAAENAQALKSES
GRAASRRGSGESQSPRAKEGGGSGQHLSRAESAPQDRQSQRGGEGSANRREPQPPRPPRA
ARAPRLVEPNPIPPITYPEALPVSGRREEIASAIARNQVVIVCGETGSGKTTQLPKICLE
LGRGLGAGGSGLIGHTQPRRIAASATGRRIAEELGTPFGEVVGYKVRFTDNLSPGASVKL
MTDGILLAETQTDPLLKAYDTLIIDEAHERSLNIDFLLGYLKEILVKRPDLKLIVTSATI
DADRFARHFGSEDKPAPVIEVSGRLYPVEVRYRPVAEDSPAVKAAQGSASSSASRGERPK
TQRETDRDLMEAIVDAVDELCREGPGDVLVFLPGEREIRDAAEALRKHHPPHTEILPLFA
RLSAAEQERVFRTSNARRIVLATNVAETSLTVPGIRYVVDTGLARVKRYSYRNKVEQLQV
ESISQAAANQRAGRCGRVADGICIRLYEESDYQGRVRFTDPEILRSSLASVILRMKSLHL
TAIETFPFIEPPPGRAIADGYQLLNELGAVDDDNQLTPLGRELARLPLDPRVGRMILAAR
DQQALKEVLIIASALSVQDPRDRPIEAQEQADQAHRRFADERSEFLQWLKIWNWFEEAIT
HKKSNKQLHEECRKNFLSQLRLREWRDVHSQLLTVVREHGWRLNEAEATFEQIHLALLTG
LLGNIGLKADDEPYYLGARGIKFYLWPGSALVKKAGKWVMAAELVETSRLYARCIAKIEP
EWIEKIGPHLLKKSLSEPHWEKRAAQVSAFERAVLYGLPIYHRRRVSFGKQDPARARELF
IRGALVEGEFDTKLAFFTHNRKLLADIEQLEHKSRRQDVLVDDELIFAYYDQALPKGIYT
GASFERWYRDEVKKSGQPEDKLRLLYLSRDDLMRHEAAGVTTDLFPKRMTMAGVDMALTY
HFEPGSPRDGVTLGVPLYALNQVDARRCEWLVPGMLKEKTQLLLKSLPQKLRRHCVPLPE
YATGFVDRHSGPRFGAGGLLESLIADIREHTQVAMKQSDFKLETLPPHLFMNFKIVDEHG
RQLAMGRNLSQLRAELGGQAQQHFQKIASSAAGAALADAGGGGVATPSQASGHAGAAAQR
GKGAPASGPQTAPQAGAQGTALYEKLTTWNFGKLPELLEIRRGGQTLFGYPALVDRGTHC
DVEVFDSPDEAARIHRAGLRRLFALQLKEPIKYLEKNLPGLREMAMQFMPRGTQEELRDQ
LIDTALDRACLQDPLPDDDLSFHTRRDEGRSRLTLLAQEIARLVGQILGEYAGVTKKLVQ
AKSFTTAHADLQNQLDGLIGKRFVADTPYPQLAHFPRYLKGIALRIDKLKADPARDARQF
AEFHPLLQNYQRAVAQRGGVLDPRLSEFRWLLEELRISLFAQELRTPMPVSVKRLYKVWE
SMQR
NT seq
4335 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatgtacccaaaagtcccgctgcggcgaacgagaatccggcgccggccgccgat
caggcgaaggccggcgacgcgaagcgccgcaatgcgcaggacgccgaacgcaacgcgccg
gatacggcgcgcgaatcgcggcgcgccgcggaaaatgcgcaggcgctgaaaagtgaatcg
ggccgcgccgcgtcccgtcggggaagcggcgagtcgcagtcgccacgcgccaaggaaggt
ggtggttccggccagcacctgagtcgagcagagagtgcgccgcaagaccggcagtcgcag
cgaggcggtgagggtagcgcgaaccgccgcgaaccgcagccgccgcgtccgccacgcgct
gcacgcgcgccgcgtctcgtcgagcccaatccgattccgcccatcacctatcctgaagcg
ctgcccgtgtcgggccgccgcgaggaaatcgcgagcgccatcgcgcggaatcaggtggtg
atcgtctgcggcgagaccggttccggtaaaaccacccagctgccgaaaatctgcctcgaa
ctgggccgcgggctcggcgcgggcggctccggtctgatcggccacacgcagccgcgccgg
atcgccgcgtcggcgacgggccgccgcatcgccgaggaactcggcacaccgttcggcgag
gtggtcggctacaaggtgcgctttaccgacaatctgtcgccgggcgcatcggtcaagctg
atgaccgacggtatcctgctcgccgaaacgcagaccgatccgctgctcaaggcgtatgac
acgctgatcatcgacgaggcgcacgagcgcagcctgaacatcgactttctgctcggttat
ctgaaggaaattctcgtcaagcggcccgatctgaaactgatcgtgacctcggcgacgatc
gacgctgaccgtttcgcgcgtcacttcgggagcgaagacaagcccgcgccggtgatcgag
gtgagcgggcggctttatccggtcgaggtgcgctaccggcccgtcgcggaagacagcccc
gccgtgaaggccgcgcaaggcagcgcgtcgtcttccgcgtcgcgtggcgagcggccgaaa
acccagcgcgaaaccgatcgcgatctgatggaagccatcgtcgatgccgtcgacgaactc
tgccgcgaaggtccgggcgacgtgctcgtattcctgcccggcgagcgcgaaatccgcgac
gccgccgaggcgctgcgcaagcaccatccgccgcatacggaaattctgccgctgttcgcg
cggctttccgcggccgaacaggagcgcgtgttccgcacgtcgaacgcgcgccgtatcgtg
ctggccaccaacgtcgccgaaacctcgctgacggtgccgggcatccgctacgtggtcgat
accggactcgcgcgggtgaagcgctactcgtatcgcaacaaggtcgagcagttgcaggtc
gagtcgatctcgcaggccgccgcgaatcagcgggccggccgttgcggccgggtcgccgac
ggcatctgcattcgcctgtacgaggaaagcgactaccagggacgcgtgcgcttcacggat
ccggagattctgcgctcgtcgctggcctcggtgattctgcgcatgaagtcgctgcatctg
acggcgatcgagacgttcccgttcatcgagccgccaccgggccgcgcgatcgccgacggc
tatcaactgctcaacgaactcggcgccgtcgacgacgacaaccagctcacgccgctcggc
cgcgaactcgcgcgcctgccgctcgacccgcgcgtggggcggatgattctggccgctcgc
gaccagcaggcgctgaaggaagtgctgatcatcgcgagtgcgttgtccgtgcaggatccg
cgcgaccggccgatcgaagcgcaggagcaggccgatcaggcgcatcgccggttcgccgac
gagcgctcggaattcctccagtggctgaaaatctggaactggttcgaagaagcgatcacg
cacaagaaatcgaacaagcaactgcacgaggaatgccgcaagaacttcctgtcgcaactg
cgtctgcgcgaatggcgcgacgtgcactcgcaactgctcacggtggtgcgtgaacatggc
tggcgtttgaacgaagcggaagcgactttcgagcagatccatctcgcactgctgacgggt
ttgctcggcaacatcggcctgaaggccgacgacgaaccgtactatctcggcgcgcgcggc
atcaagttctatctgtggcccggctcggcgttggtgaagaaagccggcaagtgggtaatg
gccgccgaactggtcgagacgagccggctatacgcccgctgcatcgcgaagatcgagccg
gagtggatcgagaagatcggcccgcacctgttgaagaagtcgctttccgagccgcattgg
gagaagcgcgcggcacaggtttccgctttcgagcgcgcggtgctttatggcctgccgatc
tatcaccggcggcgcgtgagcttcggtaaacaggatccggcgcgcgcccgcgagctgttc
attcgcggcgcgctggtggaaggcgagttcgatacgaagctcgctttcttcacgcacaac
cgcaagctgctcgccgatatcgaacagctcgaacacaagtcgcgccgccaggacgtgctg
gtcgacgacgaactgatttttgcctactacgatcaggcgctgccgaagggcatttacacc
ggcgcgtcgttcgagcgctggtatcgcgacgaggtgaaaaagagcggccagcccgaagac
aaattgcgcctgctgtatctgtcgcgtgacgatctgatgcggcacgaagccgccggcgtg
accaccgacctgttcccgaaacggatgacgatggcgggcgtcgacatggcgctcacgtat
cacttcgagccgggttcgccgcgcgacggcgtgacgctcggcgtgccgctgtatgcgctg
aatcaggtcgatgcgcgccgctgcgaatggctcgtgcccggcatgctgaaggaaaagacg
caactgctgctgaagtccttgccgcagaaactgcgccgtcattgcgtgccgctgcccgag
tacgcgacgggtttcgtcgaccggcatagcgggccgcgcttcggcgcgggcggtttgctc
gagtcgctgatcgccgatattcgcgagcacacgcaggtcgcgatgaagcagtcggacttc
aagctcgaaacgctgccgccgcatctgttcatgaacttcaagatcgtcgacgagcatggg
cgtcagctcgcgatgggccgcaatctgtcgcaactgcgcgccgaactcggcggccaggcg
cagcagcattttcagaagatcgcatcgagcgcggcgggtgcggcgttggcggacgcgggc
ggcggcggtgtcgcaacgccgtcgcaagcgtccggccacgcgggcgcagcggcacagcgc
ggcaagggcgcgcccgcatcgggcccgcagaccgcgccgcaagccggtgcgcaaggcacc
gcgctgtatgaaaagctgacgacctggaatttcggcaaattgcccgaactgctcgaaatc
cgtcgtggcgggcagacgctgttcggttatcccgcattggtggatcgcggcacgcattgc
gacgtggaagtgttcgattcacccgacgaagccgcgcggattcatcgcgcgggattgcgc
cggctgttcgcgttgcagttgaaggagccgatcaagtatctggaaaagaatctgccgggc
ttgcgcgaaatggcgatgcagttcatgccgcgcggcacccaggaagagttgcgcgatcaa
ctgatcgacaccgcgctcgaccgcgcctgtctgcaagacccgttacccgatgacgacctc
agtttccacacgcgccgcgacgagggccgcagccgtctgacgttgctggctcaggaaatt
gcccgcctggtcgggcagattctcggcgaatacgcgggcgtgacgaaaaagctggtgcag
gcgaagtcgttcacgaccgcgcatgcggatctgcagaatcagctcgatgggctgatcggc
aagcgcttcgtggccgacacgccgtacccgcaactggcgcatttcccgcgctatctgaaa
gggatcgcgctgcgcatcgacaagctgaaggcggaccccgcgcgcgacgcccgacagttc
gccgagttccatccgctgctgcagaactatcagcgcgcggtggcgcaacgcggcggcgtg
ctggatccgcgcctgtcggagttccgctggctgctggaggaactgcggatctcgctgttc
gcgcaggaattgcgcacgccgatgccggtttcggtgaagcgcctctacaaggtgtgggag
tcgatgcagcgctga
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