Paraburkholderia dioscoreae: PDMSB3_3094
Help
Entry
PDMSB3_3094 CDS
T08115
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pdio
Paraburkholderia dioscoreae
Pathway
pdio03420
Nucleotide excision repair
pdio03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PDMSB3_3094 (uvrD)
03430 Mismatch repair
PDMSB3_3094 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdio03400
]
PDMSB3_3094 (uvrD)
Enzymes [BR:
pdio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PDMSB3_3094 (uvrD)
DNA repair and recombination proteins [BR:
pdio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PDMSB3_3094 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
PDMSB3_3094 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_12
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
VVD29550
UniProt:
A0A5Q4Z2C3
LinkDB
All DBs
Position
I:complement(3174013..3176364)
Genome browser
AA seq
783 aa
AA seq
DB search
MPDLLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGLASPATILAVTF
TNKAAREMMSRLSALLPIDTRGMWIGTFHGLCNRMLRAHHRDAGLPATFQILDTADQLSA
IKRLMKGLNIDDEKYPAKNLQYFINNAKEQGLRPKDVDATDNFNRKFVELYEAYDQQCQR
EGVVDFPELLLRCYELLAHNPPLRAHYQARFRHILVDEFQDTNKLQYAWLKMLAGQTNSI
FAVGDDDQSIYAFRGANVGNMRDFEHEFNVRHLIKLEQNYRSHGHILDAANQLIANNSRR
LGKNLRTDAGHGEPVRVYESATDSQEAGWIVEEIKALISTGTSRSEIAILYRSNAQSRTI
EHTLVNAGIAYRVYGGLRFFERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSI
EQLADAARLYNCSMAAAIPYVAGKAGSSLAGFANLIGKMRAETQQMSLPETVEYVVRASG
LSEFYQNEREGQDRLENLQELVNAAAAFVSEEGYGMDTPARSIPLRPGATAAPELAVATD
DPNTVVLDAPGIADPAQNPDTMTPLAGFLSHASLEAGDNQAQAGQEAVQLMTVHAAKGLE
FTAVFITGLEEGLFPHENSAMESDGLEEERRLMYVAITRAKERLYLSFAQSRMLHGQTRY
NIRSRFFDELPQETLKWLTPKIEPGARWGGRSDNAGYGRDWFARPGYTGAASSTPAPLPA
FANEQRAAETGFRVGQQVFHTKFGEGTITALEGGGTDAKAQVKFKRHGEKWLALAVAKLQ
AVE
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacctgctagccaatctcaaccccgaacaacacgccgccgtcacgcttcccaac
gagcccgcgctcattctcgccggcgcgggcagcggcaagacccgcgttctgatcacgcgc
atcgcgtggctcatccagcacggcctggcgtcgcccgccacgattctggcggtgaccttc
accaacaaggccgcccgcgaaatgatgtcgcgcctgtcggcgcttctgccgatcgacacc
cgcggcatgtggatcggcaccttccacggtctgtgtaaccgcatgttgcgcgcgcatcat
cgtgacgcgggtttgccggccaccttccagattctcgacacggcggaccaactgtccgcg
atcaagcgtctgatgaagggccttaacatcgacgacgaaaagtacccggcgaaaaacctc
cagtacttcatcaacaacgcgaaggaacaaggcctgcggcccaaagacgtcgacgccacg
gacaacttcaaccgcaagttcgtcgaactctacgaagcctacgaccagcaatgccagcgc
gaaggcgtggtcgactttccggaactgctgctgcgctgctacgagttgctcgcgcacaat
ccgccgctgcgcgcgcactatcaggcgcgtttccggcacattctggtggacgagttccag
gacaccaacaagctgcagtatgcgtggctcaaaatgctggcgggccagaccaattcgatc
ttcgcggtcggcgacgacgaccagtcgatctacgcgttccggggcgcgaacgtcggcaac
atgcgcgacttcgaacatgagttcaacgttcgccacctgatcaagctcgagcagaactac
cgctcgcacggccatattctcgacgcggccaatcagctgatcgccaacaactcgcggcgt
ctgggcaagaatctgcgtaccgacgcgggtcacggcgaaccggtgcgcgtgtatgaatcc
gcaaccgattcgcaggaagccggctggatcgtcgaggaaatcaaggcgctgatcagcacc
ggcacgtcgcgcagcgaaatcgcgatcctgtaccgcagcaacgcccagtcacgcacgatc
gaacacacgctggtcaacgcgggtatcgcgtaccgcgtgtacggcggcttgcgctttttc
gagcgccaggaagtcaagcacgcgcttgcctatctgcgcctgatcgacaatccgaacgac
gacaccgcgttcgcgcgcgtcgtcaatttcccgacccgtggtatcggcgcgcgctctatc
gagcaactcgcggacgcggcgcgtctgtacaactgctcgatggccgcggcgattccgtac
gtggcgggcaaggcgggttcgagtctcgcgggcttcgcaaacctgatcggcaagatgcgc
gcggaaacgcagcagatgagcctgccggaaaccgtcgaatacgtggttcgcgcgagtggt
ctgtcggagttctatcagaatgaacgcgaaggccaggaccggctggagaacttgcaggaa
ctggtcaacgcggcagcggcgttcgtcagcgaagagggctacggcatggacacgccggcc
cgctccattccgctgcgtccgggtgcgaccgccgcgcccgaactggcggtcgccaccgac
gatccgaacaccgtcgtgctggacgcccccggcatcgccgatccggcgcaaaacccggac
acgatgacgccgctcgccggtttcctgtcgcatgcgtcgctcgaagcgggcgacaaccag
gcgcaagccggccaggaagccgtgcaactgatgacggtccacgccgccaagggcctcgag
ttcacggcggtgttcatcaccggtctcgaagaagggctgttcccgcacgagaacagcgca
atggaatcggacggcctggaagaagagcgccgcctgatgtacgtggcgatcacgcgggcc
aaggagcgcctgtatctgtcgttcgcgcaaagccgcatgctgcacggtcagacccgctac
aacatccgttcgcgtttcttcgacgaactgccgcaggaaacgctcaagtggctcacgccg
aagatcgagccgggcgcgcgctggggcggccgttcggacaacgcgggttatgggcgcgac
tggttcgcgcggccgggttatacgggcgccgcgtcgtcgacgcccgcgccgttacctgcg
ttcgcgaacgaacagcgcgcggcggaaacgggtttccgcgtgggccagcaagtgttccac
accaagttcggcgaaggcacgatcaccgcgctcgaaggcggcggcaccgacgcgaaggca
caggtcaaattcaagcggcatggcgagaagtggctggcgctcgcggtcgccaaactgcag
gcggtggaatga
DBGET
integrated database retrieval system
