KEGG   Paraburkholderia dioscoreae: PDMSB3_3204
Entry
PDMSB3_3204       CDS       T08115                                 
Symbol
rnc
Name
(GenBank) Ribonuclease 3
  KO
K03685  ribonuclease III [EC:3.1.26.3]
Organism
pdio  Paraburkholderia dioscoreae
Pathway
pdio03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:pdio00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    PDMSB3_3204 (rnc)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pdio03019]
    PDMSB3_3204 (rnc)
   03009 Ribosome biogenesis [BR:pdio03009]
    PDMSB3_3204 (rnc)
   03036 Chromosome and associated proteins [BR:pdio03036]
    PDMSB3_3204 (rnc)
Enzymes [BR:pdio01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.3  ribonuclease III
     PDMSB3_3204 (rnc)
Messenger RNA biogenesis [BR:pdio03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     PDMSB3_3204 (rnc)
Ribosome biogenesis [BR:pdio03009]
 Eukaryotic type
  90S particles
   RNase
    PDMSB3_3204 (rnc)
 Prokaryotic type
  rRNA processing factors
   PDMSB3_3204 (rnc)
Chromosome and associated proteins [BR:pdio03036]
 Eukaryotic type
  Gene silencing
   microRNA pathway
    Microprocessor complex
     PDMSB3_3204 (rnc)
SSDB
Motif
Pfam: Ribonucleas_3_3 Ribonuclease_3 dsrm RM44_endonuclase DSRM_2 DND1_DSRM DUF6301
Other DBs
NCBI-ProteinID: VVD29660
UniProt: A0A5Q4YVZ4
LinkDB
Position
I:complement(3294133..3295383)
AA seq 416 aa
MPLSPLESRLRYEFRNAELLRQALTHRSHSSTHNERLEFLGDSVLNCAVAALLFQRFGKL
DEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVLGAV
FLDGGFEAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAA
HNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALDEVMAAAPAIVGKPKRSKSARAA
KNVEPEIVPGVTGVQAALDLRSPDRKSERGAGRGEPRATATAESASERPTLGVTAAPLAV
IRAAHVEYSGQDKAERADKAEKAEKTAAHASDRSTDKAGAAAADKPAEKSAEKPDTKPVD
ARTAETRTAEAKPEAAAARGVDKLRNRDATPGAAAPTEHEPGVADAVQTRVADAGH
NT seq 1251 nt   +upstreamnt  +downstreamnt
atgcccctatctccgttggaaagccgtctgcgctatgaatttcgcaatgcggaattgctg
cgccaggctttaacgcaccgcagtcacagttccacgcataacgaacggctcgagtttctt
ggcgactccgttctgaattgcgcggtggctgcgcttttgttccaacgtttcggcaaactg
gacgagggcgatctgtcgcgcgtccgtgccaatctggtcaaacagcagtcgctttacgaa
atcgctcaggccctcaatatttccgaaggcttgcggctgggcgaaggcgagttgcgcagc
ggcggcttccgccgcccctcgatcctcgctgacacgctcgaagccgtgctaggcgcggtg
ttcctcgacggcggcttcgaggccgcccagacggtcatcaagcgtctttacgtgccgatt
ctcgatcatatcgacccgcgcacgctcggcaaggacgccaagacgctgctccaggaatat
ttgcagggtcacaagatcgcgctgcctacttatacggttgtggctacgcatggtgcggcg
cacaatcaacaattcgaagtcgaatgcacggtgccgaagctggacgtgaaagtctccggc
tccggcgcgagccggcgcgctgcggagcaggcggcggccaagaaagcgctcgacgaagtg
atggccgcggcgcccgccatagtcggcaaacccaagcgctcgaaaagtgcccgcgcggcg
aagaacgtcgagccggagatcgtacctggcgtcaccggcgtgcaagccgcgctggatttg
cgcagcccggatcgcaagagcgagcgtggagcagggcgcggtgaaccccgcgcaacggcc
acggcggagtccgcaagcgagcgccccacgctgggcgtcacagccgcaccgttggctgtg
attcgcgccgcgcatgtggaatacagcgggcaggacaaagccgaacgcgccgataaggcc
gagaaagcggagaagacggccgcccacgcgagcgacaggtccactgataaagccggagcg
gcagcggcggataaacccgccgagaagtccgccgaaaaacccgatacaaagcctgtggac
gcgagaacggccgaaaccagaacggccgaagccaaaccggaagccgcggccgcgcgcggc
gtcgacaaacttcgcaaccgcgacgccacacccggcgcagcggcgccgaccgaacacgaa
cccggcgtagccgacgcggtgcaaacgcgcgtcgccgacgcgggccattga

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