Paraburkholderia dioscoreae: PDMSB3_3204
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Entry
PDMSB3_3204 CDS
T08115
Symbol
rnc
Name
(GenBank) Ribonuclease 3
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
pdio
Paraburkholderia dioscoreae
Pathway
pdio03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
PDMSB3_3204 (rnc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdio03019
]
PDMSB3_3204 (rnc)
03009 Ribosome biogenesis [BR:
pdio03009
]
PDMSB3_3204 (rnc)
03036 Chromosome and associated proteins [BR:
pdio03036
]
PDMSB3_3204 (rnc)
Enzymes [BR:
pdio01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
PDMSB3_3204 (rnc)
Messenger RNA biogenesis [BR:
pdio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PDMSB3_3204 (rnc)
Ribosome biogenesis [BR:
pdio03009
]
Eukaryotic type
90S particles
RNase
PDMSB3_3204 (rnc)
Prokaryotic type
rRNA processing factors
PDMSB3_3204 (rnc)
Chromosome and associated proteins [BR:
pdio03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
PDMSB3_3204 (rnc)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
RM44_endonuclase
DSRM_2
DND1_DSRM
DUF6301
Motif
Other DBs
NCBI-ProteinID:
VVD29660
UniProt:
A0A5Q4YVZ4
LinkDB
All DBs
Position
I:complement(3294133..3295383)
Genome browser
AA seq
416 aa
AA seq
DB search
MPLSPLESRLRYEFRNAELLRQALTHRSHSSTHNERLEFLGDSVLNCAVAALLFQRFGKL
DEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADTLEAVLGAV
FLDGGFEAAQTVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAA
HNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALDEVMAAAPAIVGKPKRSKSARAA
KNVEPEIVPGVTGVQAALDLRSPDRKSERGAGRGEPRATATAESASERPTLGVTAAPLAV
IRAAHVEYSGQDKAERADKAEKAEKTAAHASDRSTDKAGAAAADKPAEKSAEKPDTKPVD
ARTAETRTAEAKPEAAAARGVDKLRNRDATPGAAAPTEHEPGVADAVQTRVADAGH
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgcccctatctccgttggaaagccgtctgcgctatgaatttcgcaatgcggaattgctg
cgccaggctttaacgcaccgcagtcacagttccacgcataacgaacggctcgagtttctt
ggcgactccgttctgaattgcgcggtggctgcgcttttgttccaacgtttcggcaaactg
gacgagggcgatctgtcgcgcgtccgtgccaatctggtcaaacagcagtcgctttacgaa
atcgctcaggccctcaatatttccgaaggcttgcggctgggcgaaggcgagttgcgcagc
ggcggcttccgccgcccctcgatcctcgctgacacgctcgaagccgtgctaggcgcggtg
ttcctcgacggcggcttcgaggccgcccagacggtcatcaagcgtctttacgtgccgatt
ctcgatcatatcgacccgcgcacgctcggcaaggacgccaagacgctgctccaggaatat
ttgcagggtcacaagatcgcgctgcctacttatacggttgtggctacgcatggtgcggcg
cacaatcaacaattcgaagtcgaatgcacggtgccgaagctggacgtgaaagtctccggc
tccggcgcgagccggcgcgctgcggagcaggcggcggccaagaaagcgctcgacgaagtg
atggccgcggcgcccgccatagtcggcaaacccaagcgctcgaaaagtgcccgcgcggcg
aagaacgtcgagccggagatcgtacctggcgtcaccggcgtgcaagccgcgctggatttg
cgcagcccggatcgcaagagcgagcgtggagcagggcgcggtgaaccccgcgcaacggcc
acggcggagtccgcaagcgagcgccccacgctgggcgtcacagccgcaccgttggctgtg
attcgcgccgcgcatgtggaatacagcgggcaggacaaagccgaacgcgccgataaggcc
gagaaagcggagaagacggccgcccacgcgagcgacaggtccactgataaagccggagcg
gcagcggcggataaacccgccgagaagtccgccgaaaaacccgatacaaagcctgtggac
gcgagaacggccgaaaccagaacggccgaagccaaaccggaagccgcggccgcgcgcggc
gtcgacaaacttcgcaaccgcgacgccacacccggcgcagcggcgccgaccgaacacgaa
cccggcgtagccgacgcggtgcaaacgcgcgtcgccgacgcgggccattga
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