Paraburkholderia dioscoreae: PDMSB3_3228
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Entry
PDMSB3_3228 CDS
T08115
Symbol
rne
Name
(GenBank) fused ribonucleaseE: endoribonuclease; RNA-binding protein; RNA degradosome binding protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pdio
Paraburkholderia dioscoreae
Pathway
pdio03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PDMSB3_3228 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdio03019
]
PDMSB3_3228 (rne)
03009 Ribosome biogenesis [BR:
pdio03009
]
PDMSB3_3228 (rne)
Enzymes [BR:
pdio01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PDMSB3_3228 (rne)
Messenger RNA biogenesis [BR:
pdio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PDMSB3_3228 (rne)
Ribosome biogenesis [BR:
pdio03009
]
Prokaryotic type
rRNA processing factors
PDMSB3_3228 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Phlebovirus_NSM
Motif
Other DBs
NCBI-ProteinID:
VVD29684
UniProt:
A0A5Q4ZFF8
LinkDB
All DBs
Position
I:3315946..3319224
Genome browser
AA seq
1092 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFRDGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDDRQELRETMAQLQLPEGMSIIARTAGIGRSAEELQ
WDLNYLMQLWRAIEAASQSGSSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ARAFMDIVMPDNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRAEINKIESRFKVNVVLIPNKHLDT
PHYKLERLRHDDARLDEPRASWKMAEEAARELESETGYSKRIEEVKPKQEAAVKGITPEK
PAPSAPVRPVATPAPVAVTPASGGFIGWLKNLFGMQPAAPAPVAPATTDKQTRPQRSERT
ERGERTGERGGERNRNRRGGAGGRDAAGRGEGTTATGGRPAQGQQPSQRREEREPREARE
PRGNREPREAREGREPRETREPREGREGRENRDRDSRGNERAETVEGAPRAERGERPERG
ERRERGERAERGERRKPQAETADALTQSDAQTAEELAQNQTALGENGAPVDQEAVAREGE
ERRRRRRGRRGGRREREEDVNGNLAADVAEAEGDNAAVTDEAPVLTARQSVEREMEVKEA
KDVTPVEVVVAAVATETAVVSELHAATETPALAVEKAAKTEAVVPVAQVPAAPAVVEPVA
ETPVAPAAAAPVEAAQAVPAASETVSLVEPVAHVEAPVQAEAEAPAVASPVEAQAAPAPV
ETAAPATVAEAPAVQPAPHAGIVESQPVVTAAATVIEPAVVEPAPVAVAPQAPQAPQAPQ
AAHHDAVSAEALKPVLEQAGLVWVNTDADKLRAAQEAAAQTVKPTRVVRERKSLPPLDSA
PMQQVETGKHAQ
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgaatgttgttcaacgcgacgcagcaggaagaactgcgcgtcgccatcgtcgat
gggcaaaaactcatcgatatcgacatcgaaaccgccgggcgcgaacagcgcaaaggcaat
atttacaagggcatcattacccgcatcgagccgtcgctcgaagcctgtttcgtcaactac
ggcgaagaccgccacggctttctgccgttcaaggaagtcgcccgccaatatttccgcgac
ggcgtcgacatgcgctcggcgcgcatccaggacgccctccgcgaaggccaggaactgatc
gttcaggtcgaaaaggaagaacgcggcaacaagggcgcagccctcaccaccttcatctcg
ctcgccggccggtatctggttctgatgccgaacaacccgcgcggcggcggcgtatcgcgc
cggatcgaaggcgacgaccgccaggaattgcgcgaaaccatggcccagctgcaattgccg
gaaggcatgagcatcatcgcgcgcacggccggcattggccgcagcgccgaagagctgcag
tgggatctgaactatctgatgcaactgtggcgcgccattgaagccgcgtcgcaaagcggt
tcgagcggccagccgatgctgatttatctcgaatcgagcctcgtgatccgcgcgattcgc
gactatttccagccggatatcggcgaaattctgatcgacaccaccgaaattcatgaccag
gcgcgcgccttcatggatatcgtgatgccggacaatgtcagcaaggtgaagcggtatcac
gacgacgtgccgctcttctcgcgcttccagatcgaacaccagatcgaaacggcgtactcg
cgcacggtgccgctgccctcgggcggcgcaatcgtgatcgaccacaccgaagcactggtc
gcgatcgacgtgaactcggcgcgcgccaccaagggcgccgacatcgaggaaaccgccgcg
cgcaccaacctcgaagccgccgacgaagtcgcccgccagttgcgcctgcgcgatctgggc
ggcctgatcgtgatcgacttcatcgacatggaatcggccaagagccagcgcgaagtcgag
caacgcctgaaagacgcgctgaagcacgaccgtgcgcgcgtccagatgggcaagatctcg
cgtttcggcctgatggaactgtcgcgtcagcgtctgcgtccggccctgtccgaaggcagc
cacgtgacttgcccgcgctgtaacggcacgggtcacatccgcgataccgaatcgtccgcg
ctgcaagtgctgcggatcattcaggaagaagcgatgaaggaaaacaccgcggcaattcat
tgccaggtgccggtcgaagtcaccgccttcctgctgaacgaaaagcgcgctgaaatcaac
aagatcgagtcgcgcttcaaggtcaacgtcgtcctgattccgaacaagcatctcgacacg
ccgcattacaagctcgagcgcctgcgtcacgacgacgcgcgcctcgacgaaccccgcgcc
tcgtggaagatggccgaagaagcggctcgcgagctcgaatcggaaaccggctacagcaag
cgcatcgaagaagtgaagccgaagcaggaagcggcggtcaagggcatcacacctgaaaag
ccggcgccgagcgcgccggttcgtccggtcgccaccccggctccggtcgcggtcacgccg
gcgagcggcggctttatcggctggttgaagaatctgttcggcatgcagccggcggcaccg
gcgcctgttgcgccggctacgacggacaaacagacgcgtccgcaacgcagcgaacgcacg
gagcgcggtgagcgcaccggcgaacgcggcggcgagcgcaaccgcaaccgccgtggcggc
gcaggcggccgcgacgcagcgggccgtggcgaaggcacgaccgccaccggcggccgtccg
gctcagggccagcagccgtcgcagcgtcgcgaggaacgcgaaccgcgtgaagcccgcgag
ccgcgtggcaaccgtgagccgcgtgaggcccgcgaaggccgtgagccgcgcgaaacccgt
gaaccacgtgaaggtcgcgagggccgggaaaaccgtgaccgcgacagtcgcggcaacgag
cgtgcggaaaccgtcgagggcgcaccgcgcgccgaacgtggcgagcgtccggaacgtggc
gaacgccgtgaacgaggcgaacgtgccgagcgcggcgaacgccgcaagccgcaagcagaa
acggcggacgcactgacgcaaagcgacgcgcaaacggcggaagaactggcgcaaaaccag
accgccttgggcgaaaacggcgcgccggtcgatcaggaagccgtggcgcgtgaaggtgaa
gagcgtcgccgccgccgtcgcggccgtcgtggcggccgtcgcgagcgcgaagaagacgtg
aacggcaacctggcagcggacgtcgcggaagctgaaggcgacaacgccgccgtgaccgac
gaagcgccggtgctcacagcacgtcagtccgtcgagcgcgaaatggaagtcaaagaggcg
aaggacgtgacgccggtggaagtggtggtcgctgccgtcgcgactgaaaccgccgtggtc
agcgaactgcacgctgcaaccgaaacgccggctctcgccgtcgagaaggcggcgaagacg
gaagcggttgtcccggtggcacaagtgccggcggctccggcagtcgtcgagccggttgcc
gaaacgccggtggcgccagccgctgccgcgccggtcgaagcagcgcaagctgtgccggcc
gccagcgaaacggtttcgctagttgaaccggtcgcgcatgtcgaggcaccggttcaagcc
gaggccgaagcgccggcagttgcttcgccggtcgaagcgcaagccgcaccggctccggtc
gaaaccgcagctccggcgacggtggccgaagcaccggccgttcagcctgcgccgcatgcg
gggatcgttgaatcgcagccggtcgtgaccgctgctgcaacagtgattgagccggcagtg
gttgagcccgcacctgtcgccgttgcaccgcaggcaccgcaggcaccgcaggcaccgcag
gcagcacatcatgacgcagtgtcggcggaagccctgaaaccggtactggaacaagccggt
ctcgtctgggtgaacaccgacgccgacaagctgcgcgcagctcaggaagccgccgcgcag
accgtcaagccaactcgcgtggtgcgcgaacgtaaatcgttgccgccgctcgacagcgcg
ccgatgcaacaagtggaaacgggtaagcacgcgcagtaa
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