Paraburkholderia dioscoreae: PDMSB3_3239.1
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Entry
PDMSB3_3239.1 CDS
T08115
Name
(GenBank) PAS domain S-box
Organism
pdio
Paraburkholderia dioscoreae
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Response_reg
HATPase_c
GAF_2
HisKA
GAF
PAS_3
PAS_4
GAF_3
PAS
PAS_9
PAS_11
SPOB_a
B12-binding
Motif
Other DBs
NCBI-ProteinID:
VVD34523
UniProt:
A0A5Q4ZNT9
LinkDB
All DBs
Position
II:complement(3355100..3360046)
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AA seq
1648 aa
AA seq
DB search
MSRRVEEIALKEPDRFVSDALPDGFAAPSFLAGGGELGALIRAYDWTQTALGAPENWPQG
LKIAIRIMLTSRQPIWIGWGDELLYFYNDPYKSIIGGKHPAALGQPTKVVWREIWTDIEP
LLNTALAGAEGIFVEQKLLIMERNGFPEETYYTFSYSPIPGDDGEPGGIICANSDGTAQV
IGERQLALLKELAAVSPNGRDWREACELSARALQANPQDLPFALLYAAEPGSDTLALVGA
CGIEPGHAGAPQTMKLDGEAPWPVVDVLDTQAPLRVGDLTQRFATALPSGPWHLPSQQAV
ILPVSPGSESAQTVVLVAALNPCRLFDDAYRSFLNLAAGQIGAAIGYARAYEEERRRAEA
LAEIDRAKTTFFSNISHEFRTPLTLMLGPLEELLAKPQLAAGGDQARLGSDIEDRALIEI
THRNGLRLLKLVNALLDFSRIEAGRMQIHMQPTDVASFTAELASLFQSAIEAAGLRLEVE
IPAAPVVAQLDREMWEKVVMNLLSNAYKFTFFGTIRVAVRVLAGVGVEVSVTDSGIGIAE
EEVPRLFERFHRVAGAPGRSVEGSGIGLAMVQELVKLHGGAVRVDSVPGEGACFTVSLPH
GAVPVQPDEEAVHAAMSKHARTYVDAALRWSPENEIVADAPAGATPAGAAPPVVASVAAA
RLLVVDDNADLREYMSRILRAAGHDVRLATDGQAALEAARQERPDLVLSDVMMPRLDGFG
LLRALRADPELRDTPVLMLSARAGEEARVDGIEHGADDYLTKPFSARELLARVSGNLQLA
RLRRETETKLREESRTLEILNRVGSTVAAELDLNRAVQIVTDAATELTGAAFGSFFYNVL
DDKGGSYMLYTLSGVPKETFEQFPMPRNTAVFAPTFMGEGIVRVSDITQDPRYGHNAPHR
GMPEGHLKVRSYLAAPVQSRSGEVVGGLFFGHPEPGVFTERAERIVAGIAAQAAIAIDNA
RLYRAAQTEIAERTKAQSALRDLNETLERRVIETVADRDRLWELSEDLLVVADIEGRLQR
VSPSWSNALGHNTHWLMSRSYVDLVHPDDVEVVRTHLAELRRTGVPVRYENRFRRIDGTW
RWVAWTLALDPDTARIHGVGRDVTADKETTEALRHAEEALRMAQKMEAIGKLTGGVAHDF
NNLLQVIGGNLQLLAKDVAGSEKPEQRVRNALAGVARGANLASQLLAFGRRQPLAPKVVN
LGRFVRGLDDMLRRALGDGVEIETIVSGGLWNTLVDPFQVENALLNLAINARDAMNGHGK
LTIEAGNAALDDAYAKRNAEVTPGQYVMLAVTDTGAGMPPEVRERVFEPFFTTKPEGQGT
GLGLSMVYGFVKQSGGHVKIYSEEGHGTTIRIYLPRVRQQEDLETNIDAGPAKGGTETVL
VVEDDEEVRTTVVEMLSDLGYRVLKAKDAQSALAIVESGVPIDVLFTDVVMPGPLRSTEL
ARKARERLPAIAVLFTSGYTDNAIVHSGRLDEGIELLSKPYTHEALARKIRYVLQTQNPQ
AAEIAEAGQHLLEIDPLAVPDSAGSVAAQPRLRILLVEDDELIRASTAELLRMFDFDILE
AEGEHDAKQILSEHAISVMLTDVGLAGKSGVDLALEVCAVRPDLRVIFLTGYDLVLTPAQ
RKVLPHAILLRKPYDLLDLIDALKTPLR
NT seq
4947 nt
NT seq
+upstream
nt +downstream
nt
atgagccgtcgcgtcgaggagatcgcgttgaaagagccggaccgcttcgtgtcggatgca
ttgcccgacggctttgccgcgccgtccttcctcgccggcggcggcgagctgggtgcgctc
atccgcgcttacgactggacgcagactgcgcttggcgcgcccgagaactggccgcaaggg
ctgaagatcgcgatccgtatcatgctcacgtcgcgccagccgatctggattggctggggc
gacgagctgctctatttttacaacgacccatataaatcgatcatcggcggcaagcatccg
gccgcgctcggccagccgaccaaagtcgtgtggcgcgaaatctggaccgatatcgagccg
cttctgaacaccgcgctggcgggcgccgaaggcatcttcgtcgaacagaagctgctcatc
atggagcgcaacggctttcccgaggagacgtattacaccttctcgtacagcccgattccc
ggcgacgacggcgaacccggcggcatcatctgcgccaacagcgacggcacggcgcaggtg
atcggcgaacggcaactggcgttgctgaaggaactggcggcggtcagcccgaacggccgc
gactggcgcgaggcttgcgaactcagcgcgcgcgccttgcaggctaacccgcaagacctt
ccgttcgccctgttatatgccgccgagccgggcagcgacacgctcgcgctggtcggcgcg
tgcggcatcgagccgggccacgcgggggcgccgcaaaccatgaagctcgacggcgaggcg
ccttggcccgtcgtcgacgtgctcgatacgcaagcgccgctgcgggtgggcgatctgaca
cagcggttcgccaccgcgttgccgagcggtccgtggcatctcccgtcgcagcaggcggtt
atcctgccggtgtcgcccggcagcgagtcggcgcaaacggtggttctggtcgctgcgctg
aatccttgccgtcttttcgacgacgcctatcgcagtttcctgaacctggccgccggtcag
atcggcgcggcgatcggctacgcgcgggcgtacgaggaggagcggcggcgcgcggaagcg
ctagccgaaatcgaccgcgcgaaaaccacgttcttctccaacatcagccacgaattccgt
acgccgttgacgctgatgctcggcccactcgaagaactgctcgccaagccgcagcttgcc
gcaggcggcgaccaggcgcggctaggcagcgacatcgaggaccgcgcgctgatcgagatc
acgcatcgcaacggcttgcggctgctgaagctcgtcaacgcgctgctggacttctcgcgc
atcgaggcgggacgcatgcagattcacatgcaacccaccgatgtcgcatcgttcacggcc
gaactcgcgtcgctgttccagtccgcgatcgaagcggccggcctgcgcctcgaagtggag
attccggccgcgcccgtggtcgcgcagctcgaccgcgagatgtgggaaaaggtcgtgatg
aacctgctgtcgaacgcgtacaagttcacgttcttcggcacgattcgcgtcgcggttcgc
gtgcttgccggcgttggcgtcgaggtcagtgtgacggatagcggcatcggtattgccgag
gaagaagtgccgcgcctcttcgaacgctttcatcgcgtggcgggcgcgccgggacgctcg
gtcgaaggcagcggcattgggctcgcaatggtgcaggaactggtcaaactccacggcggc
gcggtgcgggtggacagtgtgcccggcgaaggcgcgtgcttcaccgtctcgctgccgcac
ggcgccgtgccggtccaacctgatgaagaagccgtgcatgccgccatgagcaagcacgcg
cgcacctatgtcgatgcggcgttgcgctggagtcccgagaacgagatcgtcgccgacgcg
ccggctggcgcgacaccggctggcgcggcgccgcccgtggttgcgtcagtcgccgccgcg
cggctgctggtcgtcgacgacaacgcggatctgcgcgagtacatgagccgtatcctgcgc
gcggcgggccacgacgtgcggcttgccaccgacgggcaggccgcgctcgaagccgcgcgg
caggagcgccccgatctcgtgctctccgacgtgatgatgccgcgcctcgacggcttcggc
ctgctgcgcgcgttgcgcgccgatccggagttgcgcgacacgccggtgctgatgctgtcc
gcccgcgcgggtgaggaagcgcgcgtggacggcatcgagcacggcgccgacgactatctg
accaagcccttctcggcgcgcgaactgctggcccgcgtgtcgggcaacctgcaactcgcg
cgcctgcgccgcgagaccgagacgaagctgcgcgaagaatcgcgcacgctggagattctc
aatcgcgtcggctcgacggtggccgccgaactcgatctgaaccgcgcggtgcagatcgta
accgacgcggccaccgaactgaccggcgccgcgttcggttcgttcttctataacgtgctc
gacgataagggcggcagctacatgctttacacgctgtccggcgtgccgaaggaaaccttc
gagcagtttccgatgccgcgcaacacggcggtgttcgcgcctacgttcatgggcgaaggc
atcgttcgtgtcagcgacatcacgcaggatccgcgctatggccacaacgcgccgcatcgt
ggcatgccggagggtcatctgaaggtgcgcagctatctggccgcgcccgtgcagtcgcgc
agcggtgaagtggtcggagggctgttcttcggtcatcccgagcccggcgtgtttaccgaa
cgcgctgagcggatcgtggccggcatcgccgcgcaggcggccattgccatcgacaatgcg
cgtttgtaccgggccgcgcaaaccgaaatcgccgagcgcaccaaggcgcaaagcgcgctg
cgcgatctgaacgaaacgctggagcgccgcgtgatcgagacggtggcggaccgcgaccgt
ctgtgggagttgagcgaggatctgctggtggtggccgatatcgaaggccgcttgcagcgc
gtgagtccgtcatggagcaatgcgctcggtcacaatacgcattggctgatgtcgcgttcc
tatgtcgatctggttcacccggatgacgtagaggtggtccgcacccatctggccgaactg
cggcgcacgggcgtgccggtgcgttatgaaaaccgcttcaggcggatcgacggcacgtgg
cgctgggttgcgtggacgctcgcgctcgatcccgacacggcgcgcattcacggcgtgggc
cgcgacgtcaccgccgacaaggaaaccaccgaggccttgcggcacgccgaagaagcgctg
cgcatggcgcagaagatggaagcgatcggcaagcttacgggcggcgttgcgcacgacttc
aacaacttgttgcaggtgataggcggcaatctgcaactgctggcgaaagacgtcgccggt
tccgagaagcccgagcagcgcgtgcgcaatgcgctcgcaggcgtggcccgcggagctaac
ctcgcctcgcaactgctggcgttcgggcggcgtcagccgctggcgccgaaggtcgtcaat
ctcggccgcttcgtgcgcggactcgacgacatgctcagacgcgcgcttggcgacggcgtc
gaaatcgaaacgatcgtgtcgggcggcttgtggaatacgctggtcgatccgttccaggtc
gagaacgcgctgctgaatctggcgatcaacgcgcgcgacgccatgaacggccacggcaag
ctcaccatcgaagccggcaacgctgcgctcgacgacgcctacgccaagcgcaacgccgag
gtcacgccgggccagtacgtgatgctggcggtcaccgacacgggtgccgggatgccgccg
gaagtgcgcgagcgcgtgttcgagccgttctttacgaccaagcccgaaggtcagggcacg
ggcctcggcttgagcatggtgtatggcttcgtcaaacagtccggcggccatgtgaagatc
tacagcgaagagggtcacggcacgacgattcgcatctatctgccacgggtgcgccagcag
gaagacctcgaaacgaatatcgacgccggtcctgccaagggcggcacggaaaccgttctg
gtggtcgaggacgacgaggaagtgcgcacgacggtggtcgaaatgctttccgatctcggc
taccgtgtgctgaaagcgaaagacgcgcaaagcgcgctcgcgatcgtcgaaagcggtgtg
ccgatcgacgtgctgttcaccgacgtggtgatgcctggtccgctacgcagcaccgaactc
gctcgcaaggcgcgcgaacggttgccggcgatcgcggtgctgttcacgtcgggctatacg
gataacgcgatcgtgcattccgggcggctcgacgagggcatcgaattgctcagcaagccc
tacacgcacgaagcgttggcgcgcaaaattcgctacgtgctgcaaacgcagaatccgcag
gcggctgaaatcgccgaggccgggcagcatcttctagagatcgatccgctggctgtaccg
gatagcgccggcagcgtcgccgctcagccgcggctgcggattctactggtggaggatgac
gagctgattcgcgcaagcaccgccgaattgctgcgcatgttcgacttcgacattctggag
gccgaaggggagcatgacgcgaagcagattctgagcgagcatgcgatcagcgtgatgctg
accgacgtggggctggcgggtaagtcgggtgtggatctcgcgctggaggtatgtgccgtg
cgacccgatctgcgcgtgatctttctgaccggctacgacctcgtgctgacgccggcgcag
cgcaaggtcttgccgcacgctatcctgctgcgcaagccgtacgatctgctcgatctcatc
gacgcgctgaaaacgccgctgcgctag
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