Paraburkholderia dioscoreae: PDMSB3_3246
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Entry
PDMSB3_3246 CDS
T08115
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pdio
Paraburkholderia dioscoreae
Pathway
pdio03420
Nucleotide excision repair
pdio03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PDMSB3_3246
03430 Mismatch repair
PDMSB3_3246
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdio03400
]
PDMSB3_3246
Enzymes [BR:
pdio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PDMSB3_3246
DNA repair and recombination proteins [BR:
pdio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PDMSB3_3246
MMR (mismatch excision repair)
Other MMR factors
PDMSB3_3246
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
HHH
AAA_12
Motif
Other DBs
NCBI-ProteinID:
VVD29702
UniProt:
A0A5Q4Z2D8
LinkDB
All DBs
Position
I:complement(3334379..3336505)
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AA seq
708 aa
AA seq
DB search
MLSVAESPSFDTAAWLARLNDAQREAVEYGADTPTAPPGALLVIAGAGSGKTNTLAHRVA
NLVVNGADPRRILLLTFSRRAALEMIRRVTRIAGAALGTRAALAQGLTWSGTFHSVGARL
LREYADLIGLAPAFTINDREDSADLMNLVRHELGLSAKERRFPAKGTCFAIYSRVVNTGA
SLGQVLDKAFPWCREWEADLRMLFAAYVEAKQKQSVLDYDDLLLYWSHMAAEPAIAADLS
ARFDHVLVDEYQDTNRLQASILLALKPDGRGLTVVGDDAQSIYSFRGATVRNILDFPAHF
DPPAKQVTLERNYRSTAPILAASNAVIELASERYTKNLWTDKASAQRPRLVSVADEADQA
RYVVEQVLEAREQGMKLKSQAVLFRASHHSAALEIELTRRNIPFVKFGGLKFLDSVHVKD
VLAVLRWAENPRDRVAGFRVVQLLPGVGPATAAKVLDEIVARAGSGNPADTAGGALAAFA
APARAQEDWHPFVKLMSSVYGRQTPWPAEFEMVRRWYEPHLERNHEDAAIRHADVLQMES
IAGTYPSRERFLTELTLDPPDATSDESGVPLIDEDYLILSTIHSAKGQEWRNVFVLNGVD
GCIPSDLGTGSEEEIDEERRLLYVAMTRAKEDLHIVVPQRFYVHNQTHMGDRHVWASRTR
FIPAHLMPLFDAYAWPRVPVPSAPTATGLAAAARAKIEIGAKLRKMWD
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
gtgctctccgtcgccgaatccccgtcgttcgataccgccgcctggctggccaggctcaac
gacgcgcagcgcgaagccgtcgaatacggcgccgacacgcctacggcgccacccggcgca
ttgctggtgatcgcgggcgccggctcgggcaagaccaacacgctcgcgcatcgggtcgcc
aatctggtcgtgaatggcgccgatccgcgccgcatcctgttgctgaccttttcgcgccgc
gccgcgctcgaaatgattcgccgcgtcacgcgcattgccggcgcggcgctcggcacgcga
gccgcgctcgcgcaagggctgacatggtcgggcacgttccacagcgtcggggcgcggctg
ttgcgcgagtacgcggacctgatcggcctcgcgccggcttttacgatcaacgaccgcgag
gattccgccgacctgatgaatctggtgcgccacgagctcggtttgtcggcgaaagagcgg
cgtttcccggccaagggcacgtgttttgccatttattcgcgcgtcgtgaacaccggcgcg
tcgctcggccaggtgctcgacaaggcgtttccatggtgccgcgaatgggaggccgatctg
cgcatgctgttcgctgcttacgtcgaggcgaaacagaaacagagcgtgctcgattacgac
gacctgctgctttactggtcgcatatggccgccgagccggccatcgccgccgacctgtcg
gcgcgtttcgaccacgtgctggtcgacgaatatcaggacaccaaccggctgcaggcgtcg
atcctgctcgcgctgaagccggacggccgcggcctgaccgtggtcggcgacgacgcccag
tcgatatactcgttccgcggcgccacggtgcgcaacattctcgatttccccgcgcacttc
gatccaccggccaaacaggtcacgctcgaacgcaattaccggtcgactgcgccgattctg
gcggcgtcgaatgcggtgatcgaactggccagcgagcgctacacgaagaatctgtggacg
gacaaggcgtcggcgcagcgcccgcgcctcgtgagcgtcgccgacgaagccgatcaggcg
cgctacgtcgtcgaacaggtgctcgaggcgcgcgagcagggcatgaagctcaagtcgcag
gcggtgctgtttcgcgcctcgcatcacagcgccgcgctagaaattgaactgacccggcgc
aacattccgttcgtgaagttcggcgggttgaagtttctcgattcggtacacgtgaaggac
gtgctcgccgtgctgcgttgggcggaaaatccacgcgatcgcgtggccgggtttcgcgtc
gtgcagttgctgccgggcgtagggcccgccacggcggcgaaggtgctcgacgaaatcgtc
gcgcgcgcgggcagcggcaatcccgccgacacggccggcggcgcgctggccgcgttcgcc
gcgccggctcgcgcgcaggaagactggcatccgttcgtcaagctgatgtcgagcgtgtac
ggccgccagacaccgtggcccgccgagttcgaaatggtgcgccgctggtatgagccacat
ctcgagcgcaaccacgaggacgccgcgatccgtcatgcggacgtgttgcagatggagagc
atcgcgggcacgtatccgtcgcgtgaacgctttctgaccgaactgacgctcgatccgccc
gacgccaccagcgacgaatccggcgtccccctgatcgacgaggactacctgatcctctcc
acgatccactccgcgaaggggcaggagtggcgcaacgtgttcgtgctgaacggcgtggac
ggctgcattccgtccgacctcggcacgggcagcgaagaggaaatcgatgaggagcgccgt
ctgctgtacgtggcgatgacgcgcgcgaaagaggatctgcatatcgtcgtgccgcagcgc
ttttacgtgcacaaccagacgcatatgggcgaccgtcacgtgtgggcgtcgcgcacgcgc
ttcattcccgcgcatctgatgccgttgttcgacgcctatgcatggccgcgcgtaccggtt
ccgagcgcgcccacggcgaccgggcttgccgccgccgcgcgggcgaagatcgagataggg
gcgaagctcaggaagatgtgggattga
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