Paraburkholderia dioscoreae: PDMSB3_3320.1
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Entry
PDMSB3_3320.1 CDS
T08115
Symbol
gabD
Name
(GenBank) succinate-semialdehyde dehydrogenase I, NADP-dependent
KO
K00135
succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:
1.2.1.16
1.2.1.79
1.2.1.20
]
Organism
pdio
Paraburkholderia dioscoreae
Pathway
pdio00250
Alanine, aspartate and glutamate metabolism
pdio00310
Lysine degradation
pdio00350
Tyrosine metabolism
pdio00650
Butanoate metabolism
pdio00760
Nicotinate and nicotinamide metabolism
pdio01100
Metabolic pathways
pdio01120
Microbial metabolism in diverse environments
Module
pdio_M00027
GABA (gamma-Aminobutyrate) shunt
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
PDMSB3_3320.1 (gabD)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
PDMSB3_3320.1 (gabD)
00310 Lysine degradation
PDMSB3_3320.1 (gabD)
00350 Tyrosine metabolism
PDMSB3_3320.1 (gabD)
09108 Metabolism of cofactors and vitamins
00760 Nicotinate and nicotinamide metabolism
PDMSB3_3320.1 (gabD)
Enzymes [BR:
pdio01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.1 With NAD+ or NADP+ as acceptor
1.2.1.16 succinate-semialdehyde dehydrogenase [NAD(P)+]
PDMSB3_3320.1 (gabD)
1.2.1.20 glutarate-semialdehyde dehydrogenase
PDMSB3_3320.1 (gabD)
1.2.1.79 succinate-semialdehyde dehydrogenase (NADP+)
PDMSB3_3320.1 (gabD)
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Motif
Pfam:
Aldedh
Motif
Other DBs
NCBI-ProteinID:
VVD34604
UniProt:
A0A5Q4YYT5
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Position
II:3447396..3448853
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AA seq
485 aa
AA seq
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MLKLNDPSLLKQALYLNGEWIEQTGNGFIEVINPSTGAVVGKAPKASRAMTADAIRKAHI
ALPAWSARPAAERSQIIKRWYELIVAHVDDLARILTAEQGKPFAEARGEILYGAAFFEWY
AEDAKRLHGEVLQAPTAGRRMLVLRQPIGVCAAITPWNFPMAMIPRKAAPALAAGCTMVL
KPASATPFSALALAELAHRAGLPAGVFSVLTGAASEVGDELATHPLVRKLTFTGSTEVGR
SLMQKASGTIKKVAMELGGNAPLIVFDDADIDVAVAGTIASKFRNMGQTCVCANRIYVQG
GIHDRFVEALTRAVNALKVGDGFDADVTQGPLIDDDAVAKVEEHVADALAQGATIAAGGK
RHALGRSFYEPTVLTGVTQSMKVAIEETFGPVAPIFRFETEAEAVTAANNTEFGLAAYFF
TRDNARVWRVSEALECGIVGVNTGATSFEGAPFGGVKASGVGREGSKHGIEEFTELKYVC
IAEVC
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaactcaacgatccgagcctgctcaagcaagcgctgtatctgaatggcgaatgg
atcgagcagacaggcaacgggtttatcgaagtcatcaacccgtcgaccggcgcagtggtc
ggcaaagcgccgaaagcgagccgcgcaatgacggcggacgcaatcaggaaagcccacata
gcgctccccgcgtggagtgcgcgccctgcggcagaacgttcgcaaatcatcaaacgttgg
tacgagctgatcgtggcgcatgtcgacgatctcgcccggattctcaccgccgagcagggc
aaaccgttcgccgaggcacgcggcgagattctctatggcgcggcgtttttcgagtggtac
gcggaagatgccaagcgcctgcacggcgaggtactccaggctccgacggcaggccgccgc
atgctcgtgctacggcagccgatcggcgtgtgcgccgccatcacaccgtggaatttcccg
atggcgatgatcccgcgcaaagctgccccagcactcgccgccggctgcacaatggtgctc
aagcctgccagcgcaacgcctttttcagcgctcgcactggccgaactcgcgcatcgtgcc
gggctgcccgctggcgtgttcagcgtgctgacgggcgcggcatcggaagtcggcgacgaa
ctcgcaacccatccgctcgtacgcaagctcacgtttaccggctcgaccgaagtcggccgt
tcgctgatgcagaaggcgtcgggcacgatcaaaaaggtggcgatggaactgggcggtaac
gcaccgctgatcgttttcgacgacgcggatatcgatgtcgccgtagccggcacgatcgcg
tccaaattccgcaatatgggtcagacctgcgtgtgcgcgaatcggatctatgtgcagggc
ggcattcacgaccggttcgtcgaagcgttgacgcgcgcggtgaacgcgctcaaggttggc
gacggcttcgacgcggacgtcacccagggtccactgattgacgacgacgcggtcgcaaag
gtcgaagaacacgttgcggacgcgctcgctcaaggcgcgacgatcgcggcgggcggcaag
cggcacgccctgggccgctcgttctacgaaccaaccgtgctcaccggcgtgacccaatcg
atgaaagtcgcgatcgaggagacgtttggcccagttgcgccgatcttccgcttcgaaaca
gaagcggaagcagtaacggctgccaacaacacggaattcggcctcgccgcttattttttt
actcgcgacaatgcgcgcgtgtggcgcgtcagcgaagcgctggaatgcgggattgtgggc
gtcaacacgggcgcgacttccttcgagggcgccccattcggcggagtcaaggcatctggc
gtaggtcgcgaaggatcaaagcacggcatcgaggaatttactgaactcaaatatgtgtgc
attgcggaagtctgctga
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