Paraburkholderia dioscoreae: PDMSB3_3378
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Entry
PDMSB3_3378 CDS
T08115
Name
(GenBank) Exonuclease, DNA polymerase III, epsilon subunit family
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
pdio
Paraburkholderia dioscoreae
Pathway
pdio03030
DNA replication
pdio03430
Mismatch repair
pdio03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PDMSB3_3378
03430 Mismatch repair
PDMSB3_3378
03440 Homologous recombination
PDMSB3_3378
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdio03032
]
PDMSB3_3378
03400 DNA repair and recombination proteins [BR:
pdio03400
]
PDMSB3_3378
Enzymes [BR:
pdio01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PDMSB3_3378
DNA replication proteins [BR:
pdio03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PDMSB3_3378
DNA repair and recombination proteins [BR:
pdio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PDMSB3_3378
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
Rv2179c-like
ATP-synt_DE_N
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
VVD29834
UniProt:
A0A5Q4ZFQ7
LinkDB
All DBs
Position
I:complement(3473402..3474553)
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AA seq
383 aa
AA seq
DB search
MSEQFLPEPALDGPIVFVDLETTGGSTAEHRITEVGVVEVGPAGVSRWSSLVDPQQPIPS
FIQQLTGITNAMVRGAPTFEAIAPALFERLNGKLFVAHNASFDRGFLRGEFRRVGLAFDP
DVLCTVRLSRALFPAEKRHGLDALVERHTLVPSDRHRALADADLIWQFWQRLHGLVPLDV
LRAQIERTTRRYRLAGDITEDLLDTAPAGCGVYAFYGEQDLPLYVGRSVRVRQRLRSHLT
GERRSSKDIRLAQQVRRVEWRATGGELGAMLAEAQWIATLRPGHNRVPRVAKSDPADAPW
PFEGPIVFEEREEASQARAFHVVDRWRYVGHAASLAEAAELHASSVAGAFELSTYRILQS
HLARGLRVMPLSMSSGTAVANVA
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaacagtttttacccgaaccggccctggatggtccgattgttttcgtcgacctt
gaaacgactggtggctcgactgccgagcatcgcatcaccgaggtcggggtggtcgaagtt
ggaccggccggtgtgtcgcgctggagcagtctggtcgaccctcagcaacccattccctcc
ttcatccagcaactcaccggcatcacgaacgcgatggtgcggggcgcaccgactttcgag
gccatcgctcccgctcttttcgagcgtctgaacggcaagctgttcgtggcgcataacgct
agtttcgatcgcggctttctgcgcggcgagtttcgccgggtgggactggcgttcgatccc
gacgtgttgtgcaccgtgcgtttgtcgcgcgcgctgttcccggcggaaaaacgccacggt
ctcgacgctttggtggaacgtcatacgctcgtgccatccgatcgtcaccgcgcgctcgcc
gacgccgacctgatctggcagttctggcagcgtctgcacggccttgtgccgctcgacgta
ctgcgcgcgcagatcgagcgcaccacgcggcggtaccggcttgccggcgacatcacggaa
gatctgctcgacaccgcgcctgcgggctgtggcgtgtatgcattctatggagagcaggac
ttgcctctgtatgtcgggcgaagcgtgcgcgtgcgtcagaggctgcgttcacatttgacc
ggcgagcggcgctcgtccaaagatatccggcttgcgcaacaggtgcggcgtgtcgagtgg
cgggcaaccggcggcgaattgggcgcgatgctcgcggaggcacagtggatcgcgacgctg
cgccctggccataaccgggtgccgcgtgtggcgaagagcgatccggcggacgcgccctgg
ccgttcgagggaccgatcgtattcgaggagcgcgaggaagcctcgcaggctcgcgcgttt
catgtcgtcgaccgttggcgctacgtgggccatgcggcgtcgctcgcggaggctgctgag
ttgcatgcgtcgagcgtcgcgggagcattcgaattgtcgacgtatcgcattttgcagagc
catcttgcccggggcctgcgggtgatgccgttgagcatgtcgagcggaacggccgtggcc
aatgtggcttga
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