Paraburkholderia dioscoreae: PDMSB3_3456
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Entry
PDMSB3_3456 CDS
T08115
Name
(GenBank) P pilus assembly protein, porin PapC
KO
K07347
outer membrane usher protein
Organism
pdio
Paraburkholderia dioscoreae
Pathway
pdio02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PDMSB3_3456
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pdio02000
]
PDMSB3_3456
02044 Secretion system [BR:
pdio02044
]
PDMSB3_3456
02035 Bacterial motility proteins [BR:
pdio02035
]
PDMSB3_3456
Transporters [BR:
pdio02000
]
Other transporters
Pores ion channels [TC:
1
]
PDMSB3_3456
Secretion system [BR:
pdio02044
]
Chaperone-usher system
Type 1 pilus assembly protein
PDMSB3_3456
Bacterial motility proteins [BR:
pdio02035
]
Pilus system
Fimbrial proteins
PDMSB3_3456
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Usher
PapC_N
PapC_C
Motif
Other DBs
NCBI-ProteinID:
VVD29912
UniProt:
A0A5Q4Z2F9
LinkDB
All DBs
Position
I:3539132..3541735
Genome browser
AA seq
867 aa
AA seq
DB search
MTLSSRHGGLDGGRVPRLDPLYLAVLSALLFWHVSADAAPTPSASDDVQFDSGFLAHTGG
GSIDLTRFEKGNIVLPGEYSVDVYVNGNNVTRTQITFRQVGGKKDAQPCFGAVLLESLGV
DLQKLPVDVRDRKPSEACIELPQIIADASTAFAFDDQRLSLSIPQSALRRTPRGYVSPDR
WDSGVTTGLLNYSADVYATRNNGGPSTSQGFAGLTAGFNLGDWHFRHQGSYSWANGAGAR
YQDIATYVQRDMPSLTSQLTVGEAYTSGDLFDSTQFRGIKFETDDRMLPDSMRGYAPIIR
GIARSNARVTITQNGVKIYEATVAPGAFEIDDLYATGYGGDLNVSVKEADGSSHDFSVPY
AAVPLALRPGTHRYSFVAGTVRPSQGDSNPVFMQSTWRQGITNLITGYGGMTAAQGYMSF
VLGTALNTSFGAWGLDVTQAMTSVPGEKRYNGTSARISYSKSITQTSTDIAIAAYRYSTG
GFFGLNDAMLARERVRDGGLASDIARQRSRASLSVNQDLGGRAGRFGMTLSASNYWNRHG
SDLTYSAAYSNVFRNLSYQLSVTRENTSLDSRNTTFYASVSIPLGKTKPVIASSSVTFDD
HGNARGQATLSGSTGRDDTLFYSMTGNYASQTGGSSADGSGTLVYRAPYAELTGSAGAGQ
HYQQGSIGVRGAVVAHPGGITLSQPLSDTFAIVEAPGAAGARVLNSQGVRVDSRGYAIAP
TLTPYSLNEIELDPSGLPLDVELRVTSQQVAPRAGAVPLIKFQTAVGRTALITVRQANGE
ALPFGAPVLDESGKEVGVVGQGGRILARGLETQGTLTVRWTNDSGMSCAVPYTLAPTKDG
NSVHGYQTIETTCRPLPISAASKPSAE
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atgacgttatcttcccgccatggtggcctcgacggtggtcgggtgccgcgactcgacccg
ctctatcttgccgtactgtccgcgcttctgttctggcacgtatcggccgatgcagcaccc
acgccttccgcatccgacgacgttcagttcgatagcggctttcttgcccatactggcggt
ggcagcatcgaccttacccgtttcgagaagggcaatatcgtattgccaggcgaatacagc
gtcgatgtctatgtcaacggcaacaacgttacgcgcacccagatcacgtttcgccaggta
gggggtaagaaggatgcgcagccgtgcttcggtgcagtgctcctcgagagcctcggcgtc
gatctgcagaagctgccggtcgacgtgcgagaccggaagccgagcgaggcgtgcatcgag
cttccgcagatcatcgcagacgcaagcaccgccttcgcattcgacgatcagcgtctctcg
ctcagcatcccgcaaagcgcgctgcgcaggacgccgcggggctatgtcagcccggatcgg
tgggattccggcgtgaccaccggcctgctgaactacagcgcggacgtgtatgccacccgc
aacaacggtggaccttcgacatcgcagggctttgcggggctgacggccgggttcaatctg
ggcgactggcatttccgtcatcaaggatcgtatagctgggcgaacggcgccggcgcgcgc
tatcaggacatcgcgacgtatgttcagcgcgacatgccgtccctcacctcgcaactgacg
gtcggcgaagcctatacgtctggcgatcttttcgattccacccagtttcgcggcatcaag
ttcgagacggatgaccggatgttgcccgactccatgcgcggctacgcgccgatcatccgg
ggtatcgcgaggagcaatgcgcgcgtcacgatcacgcagaacggcgtcaagatctatgaa
gcgacggtcgcgccgggcgcattcgagatcgacgatctgtatgccacgggctacggcggc
gacctgaacgtttcggtcaaggaagccgatggttcctcccacgatttctcggtgccatat
gcggcggttccgctcgcattgcgtcccggtacgcaccgctatagcttcgtggccggcacc
gtccggccatcgcaaggcgacagcaatccggtgttcatgcagagcacatggcggcaaggc
atcacaaacctgataaccggttacggtggcatgaccgccgcgcagggttacatgtcgttc
gtgctgggcaccgccctgaatacttcattcggcgcgtggggactggacgtcacgcaggca
atgacgtccgtgccgggagagaagcgctataacgggaccagtgcgcggatcagctactcg
aagtcgattacgcagacgtccacggatatcgctattgcggcatacagatactctaccggc
ggcttcttcggtctcaacgatgccatgctggcgcgcgagcgcgtccgcgacggcggattg
gcgagcgatattgctcgccagcgcagccgcgcttcgctgtcggtcaatcaggatctgggc
ggacgcgcgggtcgcttcggcatgacgttgtcggcgagcaattactggaaccgtcacggg
tcggacctgacctattccgccgcgtactcgaacgtgttccgcaacctcagctatcagctg
tcggtgacgcgcgaaaacaccagcctcgacagcaggaacacgacgttctacgcgagcgtc
agcatcccgctcggcaagacaaagccggtcatcgcatcctccagcgtgacgttcgacgac
cacggcaacgcccgcggccaggcaacgctgtcgggcagcactggccgcgacgacacgctg
ttctacagcatgacgggcaactatgcgtcgcaaaccggcggctcgtcggccgacggaagc
ggcacgctcgtctaccgcgcgccgtatgcggagttgaccggaagtgcaggcgcaggccag
cactatcagcagggctcgatcggcgtgcgtggcgcagtggtcgcacatccgggcggtatc
acgttgtcgcaaccgttgtccgataccttcgccatcgtcgaggctcccggcgcggcgggc
gcgcgggttctcaactcgcaaggggtacgcgtggacagtcgtggctatgccatcgcgccg
acgctcacgccgtattcgctgaacgaaatcgaactcgacccgtccggactgccgctcgat
gtcgaactgcgtgtcacgtcgcagcaggtggcgccgcgtgccggtgccgtcccgctgatc
aagttccagaccgctgttgggcgcacggcgctgatcactgtgcgtcaagccaatggcgaa
gcactgccgttcggcgcaccggttctggacgagtccggcaaggaagtgggcgtggtcggt
cagggcggccggatcctcgcgcgcgggctcgaaactcagggcacgttgacggtgcgctgg
accaatgacagcggtatgtcatgcgccgtgccgtacacgctggccccgaccaaagacggc
aactccgtgcacggctatcagacgattgaaacaacctgcaggccattgccgatcagcgcg
gccagcaagccttccgcggaatga
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