Paraburkholderia dioscoreae: PDMSB3_3573
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Entry
PDMSB3_3573 CDS
T08115
Name
(GenBank) ABC-type dipeptide transport system, periplasmic component
KO
K02035
peptide/nickel transport system substrate-binding protein
Organism
pdio
Paraburkholderia dioscoreae
Pathway
pdio02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
PDMSB3_3573
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pdio02000
]
PDMSB3_3573
Transporters [BR:
pdio02000
]
ABC transporters, prokaryotic type
Peptide and nickel transporters
Peptides/nickel transporter
PDMSB3_3573
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_5
Motif
Other DBs
NCBI-ProteinID:
VVD30029
UniProt:
A0A5Q4ZEX4
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All DBs
Position
I:3653315..3654979
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AA seq
554 aa
AA seq
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MKTPANRFPALDAARLTADAYGNHAIDEFVAGRITRRDLLRYASVIGLSLAGAGVLNAPQ
ARAQGTAAASNQTIRVAHLTPAGAVDPLTVTDAASLALLNQTGEFLIDDDGEKLVLKPAL
ALSWKPNDKGDVWTFKLRPNVKFHDGQLFSAKDVVATFDRLADPASGSAALSVLKGVLSK
GGAKVIDDHTVAFHLDAPNGNFPYYVSSDNYNAVILPANYAGGYEKSFIGTGPFKLEKYQ
AKVGASFVRNPDYWGEKALPQRVQFSFYADEQAQLLALQGHQADVMGTFTVQGGAGILNN
PDYKAVGVKSSAHRQIHMRNDNPLFKDKRVRQALALSIDRDVLVRGLFKGRAQLGNDSPF
APVFPSSDAGVPQRRIDVAKAKQLLAQAGVPNGFEVTLTTEKYMEIPDLAVVVQNAAKAI
GVRINLKIESQSLYYGAGTPGKSDWLDSPLGITDYGHRGVPNVFLNAPLTSTGTWNAAHF
RNPQYDQLVAQFVAAIDLGSQRKIAGQIQTLLLDETPIIIPFFYDQLIAMRKGVNGVRFT
ALAQLYFDRAVLSA
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgaagactcccgcgaaccgatttcccgcactcgacgcagcccgcctcaccgccgacgcc
tacggcaaccacgccatcgacgaattcgtcgccggccgcatcacgcgccgcgatctgctg
cgctatgcaagcgtgatcggtttgtcgctggccggcgccggcgtgctgaatgcgccgcaa
gcgcgtgcgcaaggcaccgcggccgcgtcgaatcagaccatccgcgtggctcacctgaca
ccggccggcgcggtcgatccgctcaccgtgacggatgccgccagcctcgcgctgctgaac
cagaccggcgaattcctgatcgacgacgacggcgaaaagctcgtactcaagccggcactc
gcgttgtcgtggaaaccgaacgacaaaggcgacgtgtggaccttcaagctgcgtccgaac
gtcaagttccacgacggccagttgttcagcgccaaagacgtggtcgccacgttcgaccgc
ctggccgatccggcgagcggctcggcggcgctttccgtgctcaagggcgtgctgtcgaaa
ggcggcgccaaagtgatcgacgaccacacggtcgcgtttcatctggacgcgccgaacggc
aacttcccgtattacgtttcctcggacaattacaacgccgtgatcctgcccgcgaactac
gcgggcggttatgaaaagagcttcatcggcacaggtccgttcaagctcgaaaagtatcag
gcgaaggtgggcgcgtcgttcgtgcgcaatcccgattactggggcgaaaaagcgttaccg
caacgcgtacagttctcgttctacgccgacgaacaggcacaattgcttgcgctgcaaggc
catcaggccgacgtgatgggcaccttcaccgtgcagggcggcgccggcattctgaacaat
ccggattacaaggccgtgggcgtgaagtcaagcgcgcaccggcagattcacatgcgcaac
gacaatccgctgttcaaggacaagcgcgtgcgccaggcactggcgttgtcgatcgatcgc
gacgtgctggtgcgcggcctgttcaaagggcgcgcgcaactcggcaacgacagtccgttc
gcgccggtgtttccgtcttcggatgcgggtgttccgcaacgcaggatcgacgtcgccaaa
gcgaagcagctgcttgcgcaagccggcgtgccgaacggcttcgaagtgacgctgaccacc
gaaaaatacatggagattcccgatctcgcggtggtcgtgcaaaacgcggcgaaggccatt
ggcgtgcgcatcaatctgaagatcgaaagccagtcgctgtattacggcgcgggcacgccg
ggcaaatcggattggctggactcgccgctcggcattaccgactacggtcatcgcggcgtg
ccgaacgtcttcctgaatgcaccgcttaccagcaccggcacatggaacgccgcgcacttc
aggaatccgcaatacgatcaactggtcgcacaattcgttgcggccatcgatctcggctcg
cagcggaaaatcgccgggcagatccagacgctgctgctcgatgaaacgcccatcatcatt
ccgttcttctacgatcagctgatcgccatgcgcaagggtgtgaacggcgtgcgcttcacc
gcgctcgcgcaactctacttcgaccgcgcggtgttgagcgcgtaa
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