Paraburkholderia dioscoreae: PDMSB3_3838
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Entry
PDMSB3_3838 CDS
T08115
Name
(GenBank) Exoribonuclease R
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pdio
Paraburkholderia dioscoreae
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pdio03016
]
PDMSB3_3838
Enzymes [BR:
pdio01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PDMSB3_3838
Transfer RNA biogenesis [BR:
pdio03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PDMSB3_3838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
VVD30294
UniProt:
A0A5Q4ZGM9
LinkDB
All DBs
Position
I:complement(3934202..3936343)
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AA seq
713 aa
AA seq
DB search
MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRAKVRAKDVLIEFDKPSAAELMQQADAA
AQEIDLDFLWECAPDDEFPFATLGAEYFGERFGSIERAALVLRLHGSPVYFRRKGRGIYQ
RAPQEQLKMALAGLERKRQQALVQAGYEEELKAGRLPEAFTGSKALALLTRPDKNTIEYK
ALEGAAAARGISQARLMLECGAIPSARALHEAKFLSEFFPHGTGFPPVTVGSVPEDLPEA
DVQAFSIDDITTTEIDDAFSVEHLADGRVRIGVHIAAPALGIQRGDEVDAIARTRLSTVY
MPGDKITMLPDSVVEAFTLAEGGLRPALSLYVIVNRETQEIVASETRAERVFVKNNLRHN
TLDELVTEEALAAGAGDYPHKDDIAVLWPFAQALFEKRQAARAGYGLRREVQRNTDFNFY
VEGEHVTITPRRRGSPLDTIVAELAILANSSWGAFLHDHGVPGIYRTQRAFGAPTGPKRT
RMQTNAAPHEGLGVTQYAWSTSPLRRYVDLVNQWQLIACVQHGVTAKLAAPFKPKDADLF
AVVQGFDDTYTAYADHQRRMEYFWCLRWLKQENRKQVVASVVKGDLVRLEEIPLLLHVPG
LGVHARGTRLQMEVMSIDELTVEASVRLLHVLDAPTVTSGSEAEEADEGEEEIIDAPDES
AEGEAEAQAEAELDGDEAATAPGDAASGEGKGESESESASDATTHQHVAEPGR
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgttttcttcgaggaatcgggcagtttcaaggccggcagcgtgctgtcgcgccag
ggcgacgcttttcaggtcgagttgccgggcggccgccgcgccaaggtgcgcgcgaaagat
gtgctgatcgaattcgacaagccgagtgcggccgaactgatgcagcaggccgacgccgcc
gcgcaggagatcgatctggacttcctgtgggaatgcgcgcctgacgacgaattcccgttc
gccacgcttggcgccgagtactttggcgaacgcttcggctcgatcgagcgcgccgcgctg
gtgctgcgcctgcatggctcgccagtgtatttccgccgcaagggccgtggcatctatcag
cgcgcgccgcaggagcaactgaagatggcgctcgccgggctggagcgcaagcgtcagcag
gcgctggtgcaggccggctatgaagaagagttgaaggccggccggctgccggaagccttt
accggcagcaaggcgctggcgctgttgaccaggcccgacaagaacacgatcgaatacaag
gcgctcgaaggcgctgcggcggcgcgcggcatttcgcaagcgcgcctgatgctcgaatgc
ggcgccattccgtcggcgcgtgcgttgcacgaagcgaaattcctctccgagtttttcccg
cacggcaccggctttccgccggtcaccgtaggcagcgtgccggaagatctgccggaagcg
gacgtgcaggcgttctcgatcgacgacatcaccaccaccgaaatcgacgatgcgttctcc
gtcgagcatctggcggatggccgcgtgcggatcggcgtgcatatcgccgcgccggcgctc
ggcattcagcgcggcgacgaggtcgacgcgatcgcgcgcacgcgcctttccaccgtgtat
atgccgggcgacaagatcaccatgctgcccgacagcgtcgtcgaagcgttcacgctggcc
gaaggcggcttgcgcccggcgctttcgctgtatgtgatcgtcaatcgcgagacgcaggaa
atcgtcgcgagcgaaacgcgcgccgagcgcgtgttcgtgaagaacaatctgcgccacaac
acgctcgacgaactggtcaccgaagaggcgctggccgccggcgccggcgactatccgcac
aaggacgacatcgccgtgttgtggccgttcgcgcaggcgctgttcgaaaagcgtcaggcc
gctcgcgccggttatggtctgcgtcgcgaagtgcagcgcaataccgacttcaacttctac
gtggaaggcgagcacgtcacgatcacgccgcgccggcgtggttcgccgctcgatacgatc
gtcgccgaactggcgattctcgcgaactcgtcatggggcgcatttctgcatgatcacggc
gtgccgggcatctatcgcacgcagcgtgcattcggcgcgccgaccggccccaagcgcacg
cgcatgcagaccaatgccgcgccgcacgaaggcctcggcgtcacgcaatacgcgtggagc
acgtcgccgctgcgccgttatgtcgacctggtgaaccagtggcaactgatcgcctgcgtg
cagcatggggtgaccgcgaaactggccgcgccgttcaagccgaaagacgccgacctgttt
gccgtcgtgcaaggtttcgacgacacctataccgcgtacgccgatcaccagcgccgcatg
gagtacttctggtgcctgcgctggctgaagcaggagaacaggaagcaggtggtggcgtcg
gtggtgaagggcgatctggtgcgcctcgaagagattcctctgctgctgcatgtgccgggc
ctcggcgtgcatgcgcgcggcacgcgtttgcagatggaagtgatgtcgatcgatgaattg
accgtcgaagcgtccgtgcgtctcctgcacgtgctcgacgcgccgaccgtgacgagcggc
agcgaggctgaagaagcggacgagggcgaagaagaaatcatcgacgcccccgacgagagc
gccgaaggcgaagccgaggctcaggccgaagccgaactcgacggcgacgaggcggcgacc
gcgccgggcgacgccgcaagtggcgaaggcaaaggcgaaagcgaaagcgaaagcgcgagc
gatgccaccacgcatcagcatgtcgcggagccgggacgatga
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