Paraburkholderia dioscoreae: PDMSB3_3858
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Entry
PDMSB3_3858 CDS
T08115
Symbol
ffh
Name
(GenBank) Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)
KO
K03106
signal recognition particle subunit SRP54 [EC:
3.6.5.4
]
Organism
pdio
Paraburkholderia dioscoreae
Pathway
pdio02024
Quorum sensing
pdio03060
Protein export
pdio03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03060 Protein export
PDMSB3_3858 (ffh)
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
PDMSB3_3858 (ffh)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
PDMSB3_3858 (ffh)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pdio02044
]
PDMSB3_3858 (ffh)
Enzymes [BR:
pdio01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.5 Acting on GTP to facilitate cellular and subcellular movement
3.6.5.4 signal-recognition-particle GTPase
PDMSB3_3858 (ffh)
Secretion system [BR:
pdio02044
]
Sec (secretion) system
Prokaryotic Sec-SRP core components
PDMSB3_3858 (ffh)
Eukaryotic Sec-SRP protein
PDMSB3_3858 (ffh)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SRP54
SRP_SPB
SRP54_N
CbiA
AAA_22
Zeta_toxin
AAA_16
AAA_31
AAA_30
YqeC
AAA_33
cobW
AAA_14
T2SSE
APS_kinase
Rad17
AAA_18
Mg_chelatase
AAA_19
NACHT
Helicase_RecD
ResIII
TsaE
Thymidylate_kin
Motif
Other DBs
NCBI-ProteinID:
VVD30314
UniProt:
A0A5Q4ZGP2
LinkDB
All DBs
Position
I:3955711..3957078
Genome browser
AA seq
455 aa
AA seq
DB search
MLDNLTQRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVALPVVREFIAKVKEKAL
GEEVISSLSPGQALVGVVQRELTAIIGGDYEGKAVELNLAVTPPAVILMAGLQGAGKTTT
VGKLAKLLREKYKKKVLTVSCDVYRPAAIAQLKTVTEQVGADFFPSEPDQKPVDIARAAV
DWAKRHYHDVLLVDTAGRLGIDEAMMKEITALHTELKPAETLFVVDAMLGQDAVNTAKAF
SDALPLTGVVLTKLDGDSRGGAALSVRHVTGKPIKFVGVAEKLDGLEVFHPDRMANRILG
MGDILALVEEAQRGVDVQAAQKLADKVKKGGDFDLNDFRAQLTQMKGMGGLSSLMDKLPA
QFQQAAAGADMGQAEKQMRRMEGIINSMTPLERAKPDLIKATRKRRIAAGAGVQVQEVNR
MLNQYDQMRTMMKKLKGGNLQKMMRGMKGMLPGMR
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgctcgacaatctgactcaacggatggcgcgcgtcgtcaagacgctgcgcggcgaagcc
cggctcaccgaggcgaacacccaggaaatgctgcgcgaggtgcgtctcgcgctgctcgag
gccgacgtggcgctgcccgtcgtgcgcgagttcatcgccaaggtgaaggaaaaggcgctc
ggcgaggaagtcatcagcagcctgtcgccgggccaggcgctcgttggcgtggtgcagcgc
gaactgaccgcgatcatcggcggcgactacgaaggcaaggcggtcgaactcaacctcgcc
gtcacgccgccggccgtcatcctgatggcgggcctgcaaggcgccggtaaaacgaccacc
gtcggcaagctcgccaagctgctgcgcgaaaagtacaagaagaaagtactgaccgtttcg
tgcgacgtctaccgccctgccgctatcgcgcagttgaagacggtgaccgagcaggtcggc
gcggatttcttcccgtccgaaccggaccagaaaccggtcgacatcgcgcgcgccgccgtg
gattgggccaagcgccactatcacgacgtgctgctggtcgacacggccggccgtctcggc
atcgacgaagcgatgatgaaggaaatcaccgcgctgcacaccgagctgaaaccggcggaa
acgctgttcgtggttgacgcgatgctcggccaggacgcggtgaacaccgccaaggccttt
agcgacgcactgccgctcaccggcgtggtcctcaccaagctcgacggcgactcgcgcggc
ggcgcggcgctctccgtgcgccatgtcacgggcaagccgatcaagttcgtcggcgtcgcg
gaaaagctcgacggcctcgaagtcttccacccggatcgcatggcgaaccggattctcggc
atgggcgacattcttgccctcgtcgaagaagcgcagcgcggtgtggacgttcaggcggcg
cagaaactcgccgacaaggtcaagaaaggcggcgacttcgatctgaacgatttccgcgca
cagctgacgcaaatgaagggcatgggcggcctgtcgtcgctgatggacaaattgcccgcg
caattccagcaggccgccgccggcgccgacatgggccaggccgaaaagcagatgcgccgc
atggaaggcatcatcaattccatgacgccgctggaacgcgcgaagcccgacctgatcaag
gccacgcgcaagcgccgcattgccgcgggcgcgggcgtgcaggtccaggaagtcaaccgc
atgctgaatcagtacgaccagatgcgcaccatgatgaaaaagctcaagggcggcaatctg
cagaagatgatgcgcggcatgaagggcatgttgcctggcatgcgctaa
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