Paraburkholderia dioscoreae: PDMSB3_3892
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Entry
PDMSB3_3892 CDS
T08115
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoylalanine--D-glutamate ligase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
pdio
Paraburkholderia dioscoreae
Pathway
pdio00470
D-Amino acid metabolism
pdio00550
Peptidoglycan biosynthesis
pdio01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
PDMSB3_3892 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
PDMSB3_3892 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pdio01011
]
PDMSB3_3892 (murD)
Enzymes [BR:
pdio01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
PDMSB3_3892 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
pdio01011
]
Precursor biosynthesis
Amino acid ligase
PDMSB3_3892 (murD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
MurD-like_N
Phage_cap_E
Motif
Other DBs
NCBI-ProteinID:
VVD30348
UniProt:
A0A5Q4ZPN0
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All DBs
Position
I:complement(3990417..3991931)
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AA seq
504 aa
AA seq
DB search
MFGEKFRDRQKPMVLVLGLGESGLAMARWCARHGCRLRVADTREVPPNLSALEAHGVDAQ
FVGGPFSPVLLEGVELVAISPGLSPLAADLLPLIAAAREQGIPVWGELEFFSQALKTLGE
SGYAPKVIAITGTNGKTTTTSLTGLLCERAGRKVAVAGNISPALLDKLSEAIDNTALPDV
WVLELSSFQLETAHTFSPDAAVVLNITQDHLDWHGGLDAYAAAKGRIFGTQTVRVLNRDD
SRVMALAPSEDSEAEVITFGVTEPKNDGDYGLLRDNGMIWLVEAHDRDASDEPVPKRRRK
NEVATPPNIALKRLMPADALRIRGLHNAANALAAYALARAVGLPGAPLLHGLREYRGEPH
RVELIASIDGIDYVDDSKGTNVGATVAALDGLAQRVVLIAGGDGKGQDFEPLAAPVMRWC
RAVMLIGRDAPQIRAALEDTGIAMTDHATLEEATRAAAALAQPGDAVLLSPACASFDMFK
GYAHRAAVFRSTVEEIAAERGTMI
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgttcggcgagaagtttcgggatcggcaaaagccgatggtgctcgtgctgggactgggt
gaatccggtctcgctatggcgcgctggtgcgcgcggcacggctgtcggctgcgtgtggcc
gatacgcgcgaagtgccgccgaacctgtccgcgctcgaagcacacggcgtcgacgcgcaa
ttcgtcggcggcccgttttctccggtgctgctcgaaggcgtcgaactcgtcgccatcagc
ccgggtttgtcgccgcttgccgcggatctgttgccgctgatcgcggcggcgcgcgagcag
ggcatccccgtgtggggcgaactcgaatttttctcgcaagcgctgaagacgctcggcgaa
agcggctatgcgccgaaagtgatcgcgattaccggcactaacggcaagaccacgaccacg
agcctcactggactgctctgcgagcgcgccggcaggaaggtcgcggtggcgggcaatatc
agcccggcgctgctcgacaagctctcggaagcgatcgacaacaccgcgttgccggacgtg
tgggtgctggagctctcgagcttccagctcgaaaccgcgcacacgttttcgccggatgcg
gcggttgtgctgaacatcacccaggatcacctcgactggcacggcggactcgacgcatac
gctgccgcgaagggccgcatctttggtacacaaacggtgcgtgtgctgaatcgggacgac
tcgcgcgtcatggcgctggcgccttcggaagacagcgaagcagaggtgatcacgttcggc
gtcaccgagccgaagaacgacggcgactacggtttgctgcgcgacaacggcatgatctgg
ctggtcgaagcgcacgatcgcgacgcgagcgacgaacctgtgccgaagcgccgccgcaag
aacgaagtggcgacgccgccgaacattgcgttgaagcgcctgatgccggcggacgccttg
cgcattcgcggtttgcacaacgccgccaacgcgctcgccgcctacgcgctcgcccgcgcg
gtcggcctgccgggtgcgccgctgctgcacggtctgcgcgaatatcgcggcgagccgcat
cgcgtggaattgatcgcgtcgatcgacggtatcgattatgtggacgacagcaagggcacc
aatgtcggcgcgacggtcgccgcgctcgacggactcgcgcagcgcgtggtgctgatcgcc
ggcggcgacggcaagggccaggatttcgaaccgctcgcggcgccggtcatgcgctggtgc
cgcgccgtgatgctgatcggccgtgacgcgccgcagattcgcgccgcgctggaagacacc
ggtatcgcgatgacggaccacgccacgctcgaagaagcaacgcgcgccgcggcagcgctg
gcgcagccgggcgacgccgtactgctgtcgccggcttgcgcaagcttcgacatgttcaag
ggttacgcgcaccgcgccgcggtgttccgcagcacggtggaagagatcgcagccgaacgg
gggacgatgatatga
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