Paraburkholderia dioscoreae: PDMSB3_4086
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Entry
PDMSB3_4086 CDS
T08115
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pdio
Paraburkholderia dioscoreae
Pathway
pdio03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PDMSB3_4086 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdio03019
]
PDMSB3_4086 (recQ)
03400 DNA repair and recombination proteins [BR:
pdio03400
]
PDMSB3_4086 (recQ)
Enzymes [BR:
pdio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PDMSB3_4086 (recQ)
Messenger RNA biogenesis [BR:
pdio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PDMSB3_4086 (recQ)
DNA repair and recombination proteins [BR:
pdio03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PDMSB3_4086 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
RecQ_Zn_bind
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
VVD30536
UniProt:
A0A5Q4ZH54
LinkDB
All DBs
Position
I:complement(4164508..4166355)
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AA seq
615 aa
AA seq
DB search
MSRPLEILNEVFGYPAFRGQQGEIVEHVAGGGDCLVLMPTGGGKSLCYQIPSLVRRERGF
GTGIVVSPLIALMQDQVAALTEVGVRAAYLNSTLSSAEAMATERALREGEIDLLYVAPER
LMTPRFQELLERTRIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPNVPRIALTATAD
AITRDEIIHRLALDDARIFVSSFDRPNIRYRIVEKDNARTQLLDFIRAEHSKPDGTTDAG
VVYCLSRRKVEETAEWLKEKGMRALPYHAGMEFEFRQKHQEMFQREEGIVMCATIAFGMG
IDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGMPANAWMAYGLGDVVQQRKMIDESDADD
AHKRVQTGKLDALLGLCEAATCRRVRLLAYFGESSKPCGNCDNCLEPPDTWDATREAQMA
LSCVFRAQRASGFHFGAGHLIDILRGNSNEKILQRGHEKLTTFGIGSALGEPEWRAIFRQ
LVAFGYLTVDHEGFGSLVLTEASKPVLKGEQNVTMRRYVKPTRTRQSSGRTSERADPTIG
MGPRERARWERLRAWRTETAKSDGVPAYVIFHDATLAEIARNGPDSIEDLRGIPGMGARK
LDRFGDELLEVVAAD
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgtccgctcgaaatcctcaacgaagtcttcggttaccccgcgttcagaggacag
cagggcgaaattgtcgagcacgtcgccggcggcggcgattgtctcgtgctgatgccgacg
ggcggcggcaaatccttgtgctatcagattccgtcgctggtgcgccgcgaacgcggcttc
ggcactggcatcgttgtgtcgccgctgatcgcgctgatgcaggatcaggtggccgcgctt
acagaggtaggcgtgcgcgccgcgtatctgaattcgacgctgtcgagcgccgaggcaatg
gcgaccgagcgtgcattgcgcgaaggcgaaatcgacctgctttacgtggcgccggaacgg
ttgatgacgccccgtttccaggaattgctggagcgtacgcgcatcggcttattcgccatc
gacgaggctcattgtgtgtcgcaatggggacatgatttccggccggaatacattcagttg
tcggtgctgcacgagcggtttccgaacgtgccccgaatcgcactgacggccaccgccgat
gcaatcacgcgggatgagatcatccaccggctcgcgctggacgacgcgcgcattttcgtg
tcgagcttcgaccggccgaacatccgctatcgcatcgtcgaaaaggacaacgcgcgtacg
cagttgctggacttcatccgcgcagaacattcaaagcccgatggcacgaccgacgccggt
gtcgtttattgcctgtcgcgccgcaaggtcgaagagaccgcggagtggctgaaagaaaaa
gggatgcgcgcgctgccgtatcacgccggcatggagttcgaattccgtcagaagcatcag
gagatgtttcagcgcgaggaaggcatcgtgatgtgcgcgacgatcgcgtttggcatgggc
atcgacaagccggatgtgcgttttgtcgctcacctcgacttgccgaagagtgtcgaaggc
tattaccaggaaacggggcgcgcgggccgcgacggcatgccggcgaatgcatggatggcc
tacggcctcggcgacgtcgtgcagcaacgcaagatgatcgacgagtccgacgccgacgac
gcgcacaagcgcgtgcagaccggcaagctggacgcgctgctcggtctctgcgaagcggca
acctgccggcgagtgcggttgctggcgtacttcggcgagtcgagcaagccatgcggcaac
tgcgacaactgtctcgaaccgccggacacctgggatgcaacgcgtgaggcacagatggcg
ctgtcgtgcgtgttccgcgcgcagcgggcgagcggctttcatttcggcgcgggacatctg
atcgacatcctgcgcggcaacagcaacgagaaaatcctgcagcgtggtcacgagaaactg
accacgttcggcatcggctcggcgctaggcgaaccggagtggcgcgcgatatttcgccaa
cttgtcgcgttcggctatctgacggtcgatcatgagggattcggctcgctggtcctgacc
gaggcaagcaaacccgtgctaaagggcgagcaaaacgtcacgatgcgccggtacgtgaag
ccgacgcgtacgcgtcaatcgtccggccggaccagcgaacgtgccgacccgacaatcggc
atgggaccgcgcgaacgtgcccgctgggaacgcctgcgcgcatggcgcactgaaacggcg
aagagcgacggcgtgccggcgtacgtgatcttccacgacgcgacgctggcggaaattgcc
cgtaacggccccgattccatcgaggatttacgcggcattccgggtatgggcgctcgcaaa
ctcgaccgtttcggtgacgaattgctggaagtggtcgccgccgactga
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