Paraburkholderia dioscoreae: PDMSB3_4087
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Entry
PDMSB3_4087 CDS
T08115
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain (Transcriptase beta' chain) (RNA polymerase beta' subunit)
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pdio
Paraburkholderia dioscoreae
Pathway
pdio03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PDMSB3_4087 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdio03021
]
PDMSB3_4087 (rpoC)
03400 DNA repair and recombination proteins [BR:
pdio03400
]
PDMSB3_4087 (rpoC)
Enzymes [BR:
pdio01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PDMSB3_4087 (rpoC)
Transcription machinery [BR:
pdio03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PDMSB3_4087 (rpoC)
DNA repair and recombination proteins [BR:
pdio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PDMSB3_4087 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
PYNP_C
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
VVD30537
UniProt:
A0A5Q4ZGY2
LinkDB
All DBs
Position
I:complement(4166575..4170813)
Genome browser
AA seq
1412 aa
AA seq
DB search
MKALLDLFKQVQQPEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVIDPGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM
GAEGVRELLRAINIDEQVEMLRTELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPDWMVLE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNILFPANGDPSIVPSQDIVLGLYYATREAVNAKGEGLTFTGVSEALRAYENK
EVELASRVNVRITEMVHNEDKSEGAPAFVPKISLYPTTVGRAILSEILPPGLPFSVLNKP
LKKKEISRLINTAFRKCGLRETVIFADQLMQSGFRLATRAGISICVDDMLVPPQKETIVG
DAAKKVKEYDRQYMSGLVTSQERYNNVVDIWSATSEAVGKAMMEQLSTEPVTDRDGNETR
QESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEAL
RDRILGRVTVADVVNPESQETLYETGTLLDEDAVEEIERLGIDEVRVRTPLTCETRYGLC
AACYGRDLGRGSSVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSN
GTVRFTATMRYVTNAKGEQIVISRSGEAMITDDHGRERERHKVPYGATLLQLDGAQIKAG
TQLATWDPMTRPIITEYGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVKRRGSQASKT
VRPQVKLLDANGEEVKIPNTEHSVQIGFQVGALITVKDGQQVQVGEVLARIPTESQKTRD
ITGGLPRVAELFEARSPKDAGILAEVTGTTSFGKDTKGKQRLVITDLEGNQHEFLIAKEK
QVLVHDGQVVNKGEMIVDGPADPHDILRLQGVEALSRYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQITDNGDTRFIPGEQVERSDMLDENDRMIAEDKRPATYENVLLGITKASL
STDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKARKSKEL
SDRERFDQIAAEESFEFGTPETPAAEQQHSGE
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctctgctcgatctattcaagcaagtccaacagcctgaagtttttgacgcgatc
aagatcggtctggcttcgccggacaagatccgttcgtggtcgttcggtgaagtgaagaag
ccggaaaccatcaactaccggacgttcaagccggaacgcgatggtttgttctgcgcgaag
atcttcgggccgatcaaagactacgaatgcctttgcggcaagtacaagcgcctgaagcac
cgtggcgtgatctgcgagaagtgcggcgttgaagtgacgctggcgaaagtgcgtcgcgaa
cgcatgggccacatcgaactggcctcgccggttgcgcacatctggtttttgaagtcgctg
ccgtcgcgtctgggcatggtgctcgacatgacgctgcgcgacatcgaacgcgtgctgtac
ttcgaagcatatgtcgtgatcgatccgggcatgacgccgctgaaagcgcggcagatcatg
accgaagaggattactacaacaaggtcgaagaatacggtgacgaattccgtgccgagatg
ggcgcggaaggcgtgcgcgaactgctgcgcgcgatcaacatcgacgaacaggtcgagatg
ctgcgcaccgaactcaagaacacgggttcggaagcgaagatcaagaagtacgcgaaacgc
ctgaaggtgctcgaggctttccagcgttcgggcatcaagcctgactggatggtgctcgaa
gtgctgccggtgctgccgccggaactgcgcccgctggtgccgctggatggcggccgcttt
gcgacgtcggacctgaacgacctgtatcgccgcgtgatcaaccgtaacaaccggttgaag
cgtctgctcgaattgaaggcgcctgaaatcatcgtccgcaacgaaaagcggatgctacag
gaagccgtcgattcgctgctcgacaacggtcgtcgcggtaaggctatgaccggcgcgaac
aagcgtccgctgaagtcgctcgctgacatgatcaagggtaagggcggtcgtttccgccag
aacctgctcggtaagcgcgtcgactattcgggccgttcggtgatcgtggtcggcccgacg
ctcaagctgcatcagtgcggtctgccgaagctgatggcgctcgaactgttcaagccgttc
atcttcaacaagctcgaagtgatgggtgtcgccaccaccatcaaggctgcgaagaaggaa
gtcgagaaccagacgccggtggtgtgggacattctcgaagaagtcattcgtgaacatccg
gtcatgctgaaccgtgcgcctacgcttcaccgtctcggcattcaggctttcgagccggtg
ctgatcgaaggtaaggcgatccagctgcacccgctcgtttgcgcggcgttcaacgccgac
ttcgacggtgaccagatggctgttcacgtgccgctgtcgctcgaagcgcagatggaagcg
cgcacgctgatgctggcgtcgaacaacattctgttcccggccaacggcgatccgtcgatc
gtgccgtcgcaggatatcgtgctcggcctgtactacgcgacgcgtgaagcagtgaacgcc
aagggcgaaggtctgacgttcaccggtgtgtcggaagcattgcgtgcgtacgagaacaag
gaagtcgagctggcctcgcgcgtcaacgtgcggatcacagaaatggtccataacgaagac
aagtcggaaggtgcgccggcgttcgtgccgaagatctcgctgtacccaaccaccgtcggc
cgcgcaatcctgtcggaaatccttccgccgggcctgccgttctcggtgctgaacaagccg
ctgaagaagaaggaaatctcgcgtctgatcaacactgcattccgcaagtgcggtctgcgt
gaaacggtgattttcgccgaccagttgatgcagtcgggtttccgtctggcaacgcgcgcg
ggtatctcgatctgcgtcgacgacatgctcgtgccgccgcagaaggaaaccatcgtcggc
gacgccgcgaagaaggtgaaggaatacgaccgtcagtacatgtcgggtctcgtcacgtcg
caagaacgctacaacaacgtggtcgacatctggtcggcaacgtcggaagcggtcggtaag
gcgatgatggagcagttgtcgacggaaccggtcacggatcgcgacggcaacgaaacgcgt
caggaatcgttcaactcgatttacatgatggcggactcgggtgctcgtggttccgcggtt
cagattcgtcagctggccggtatgcgtgggctaatggcgaagccggacggctcgatcatc
gagacgccgattacggcgaacttccgtgaaggcctgaatgtgttgcagtacttcatctcg
acccacggcgcacgtaagggtctggctgatacggcactgaagacggcaaactcgggttac
ctgacgcgccgtctggtcgacgtgacgcaggatctggtggtggtcgaggacgattgcggt
acgtccaacggcgtcgccatgaaggcgttggtcgaaggcggtgaagtcgtcgaagcgctg
cgtgaccgtatcctcgggcgcgtgacggtggctgacgtcgtcaatccggaatcgcaggaa
acgctgtacgaaacgggcacgttgctcgacgaagatgcggtcgaagaaatcgaacgcctc
ggtatcgacgaagtgcgcgtgcgtacgccgctgacttgcgaaacgcgttacggtctgtgc
gcagcctgctacggccgcgacctgggtcgtggctcgtcggtcaacgtcggtgaagcagtc
ggtgtgatcgctgcgcagtcgatcggtgaaccgggcacgcagctcacgatgcgtacgttc
cacatcggtggtgcggcatcgcgtgcggcggtggcttcgtcggttgaagcgaagtcgaac
ggtacggtgcgtttcacggcaaccatgcgttacgtcaccaacgcgaagggcgagcagatc
gtcatctcgcgttcgggcgaagcgatgatcaccgacgaccacggtcgcgagcgcgaacgt
cacaaggtgccgtacggcgcgacgctgttgcaactggacggcgcgcagatcaaggccggc
acgcaactggcgacgtgggatccgatgacgcgtccgatcatcaccgagtacggtggtacg
gtgaagttcgaaaacgtcgaagaaggcgtgacggttgccaagcagatcgacgacgtgacg
ggtctgtccacgctggtcgtgatcgacgtgaagcgtcgtggttcgcaagcgtcgaagacg
gtgcgtccgcaggtcaagctgctcgatgcgaacggcgaagaagtcaagatcccgaacacc
gagcactcggtgcagatcggcttccaggtcggcgctctgattaccgtgaaggacggtcag
caagtgcaggtcggtgaagtgctcgcacggatcccgactgaatcgcagaagacgcgtgac
attacaggcggtctgccacgtgtggcggaactgttcgaagcacgttcgccgaaggacgca
ggtatcctggcggaagtcacgggtacgacgtcgttcggtaaggacacgaagggcaagcag
cgtctcgttatcacggacctcgagggcaaccagcacgagttcctgatcgcgaaggaaaag
caggttctggtgcacgatggtcaggtcgtcaacaagggcgaaatgatcgtcgacgggccg
gcggatccgcacgacattctgcgtttgcagggcgtcgaggcgctgtcgcgttacatcgtg
gacgaagtgcaggacgtgtaccgtctgcaaggcgtgaagatcaacgacaagcacattgaa
gtgattgttcgtcagatgctgcgccgcgtgcagattacggacaacggcgatacgcgtttc
atcccgggcgaacaggtcgagcggtcggatatgctcgacgaaaacgaccgtatgatcgcg
gaagacaagcgtccggcaacgtacgaaaacgtgctgctcggtatcacgaaggcctcgttg
tcgactgattcgtttatctccgcggcgtcgttccaggaaacgacccgcgtgctgaccgaa
gcggcgatcatgggcaagcgcgacgacctgcgtggtctgaaggaaaacgtgatcgtcggc
cgtctgattccggccggtacgggtctcgcgttccacaaggcacgcaagagcaaggaactg
tccgaccgcgagcgtttcgatcagatcgcagcggaagagtcgttcgaattcggtacgccg
gaaaccccggccgccgaacagcagcactcaggcgagtaa
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integrated database retrieval system
