Pantoea dispersa: KFZ74_04310
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Entry
KFZ74_04310 CDS
T10176
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pdip Pantoea dispersa
Pathway
pdip03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pdip00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
KFZ74_04310 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdip03400
]
KFZ74_04310 (recB)
Enzymes [BR:
pdip01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
KFZ74_04310 (recB)
DNA repair and recombination proteins [BR:
pdip03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KFZ74_04310 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
AAA_11
Motif
Other DBs
NCBI-ProteinID:
UKY37334
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All DBs
Position
969263..972802
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AA seq
1179 aa
AA seq
DB search
MSQRPESLNPLTLPLQGERLIEASAGTGKTFTIGLLYLRLLLGLGGPNAYARPLSVEEIL
VVTFTEAATAELRGRIRENIHELRLACLRGVSANPMLMQLLADIAQPAEAASLLLAAERQ
MDEAAIFTIHGFCQRMLNLNAFESGMLFEQQLIEDEQQLLRQATADFWRRHCYPLTLDIA
RVIVAEWSGPEQLLSTLRPWLQGESPSLRLAPHDSETLTSRHSSNLARIAEMKAQWRALG
EEVLTLVGQSDVDKRSYSSKNLPLWVSKVSAWAQSETADYQIPAELARFGQQVLNEKTKK
GAPPQHPLFAAIDTFLAQPLSLRDLVIARALVEVRHAVRKEKRLQALLGFDDLLSRLDEA
LQQPGGEQLAQAIRQRFPVALIDEFQDTDPLQYRIFRTLYLQQPQHALLLIGDPKQAIYA
FRGADIFTYIRARSEVHAHYTLDTNWRSSPAMVESVNQLFMRQPAPFLFADIPFLPVNAA
PPNQRLSLSIDGEEQAALRFWLQPGAGCSVSEYQQLMALQCAADISRWLQAGQQQRALLG
KTPDQRPVQASDITILVRSRNEANLIRAALNQLGIPSVYLSNRDSVYTTPEARELLWLLQ
AILAPEQERMLRTALATSLFAFDAAQLDALDQDARGWDALVDTFARWQQLWHQRGVLPML
RQLMLERQLAENLLASENGERRLTDLLHLGELLQEAAAQLDSPHALVRYLAQQIARPDSQ
SASQQLRLESDRHLVQIVTIHKSKGLQYPLVWLPFAAGFREADIALYHDREHYNAVLDLQ
NDEQSLALAEQERLAEDLRLLYVALTRSVYHCSVGVAPLFRGTRKKEGESDLHKSALGFL
LQRGEPATAEQLASLLHDISVTGTEVVLAQPQGHERWQALDEVDDELDARSVTRALADPW
RVTSYSGLQQHGSHRLLDVMPGFDAEAVGEDREAEVLEAALTPHHFPRGAAPGTFLHTLF
ESLDFTQPPSAPQLEQQLQQSGYPLHWQPMLSEWITRVVNTPLNTEGIRLSDITPGNRLI
EMEFYLPIDGLLTAPALDALMRQDPLSRQAPPLDFRQVQGMLKGFIDLVFRWQGKYYLLD
YKSNWLGESHQAYTPQAMAQAMIDHRYDLQYQLYTLALHRYLQHRLTNYDYEQHFGGVFY
LFLRGMDGSSPDNGVFHTRPTSDFVSQLDSLFRGPGAAA
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagcgccctgaatcgctcaatcccctgacgctgccgctgcagggtgagcgtctg
attgaggcctccgccggcaccggtaagacctttaccattggtctgctctacctgcgtttg
ctattgggacttggcggaccgaatgcctatgcgcgcccgctgtcggtggaagagattctg
gtggtgacctttaccgaagccgccaccgccgaactgcgcggccgtatccgggaaaatatt
catgagctgcggctggcctgtctgcgcggcgtcagcgcaaatccgatgctgatgcagctg
ctggccgacattgcccagcccgctgaggcggcctcgctgctgctggcggcggaacgtcag
atggatgaggcggcgattttcaccattcacggcttctgccagcgcatgctgaatctcaat
gcgtttgagtccggtatgctgttcgagcagcagctgattgaagatgaacagcagctgttg
cgtcaggcgacggcggatttctggcggcgccactgctatccgctgacgctggatattgcg
cgcgtcatcgttgcggaatggagcgggcctgaacagttattgtcgacgctgcgcccgtgg
ctgcagggcgagtcgcccagcctgcgcctggcgccgcacgacagtgaaaccctgacatcg
cgccacagcagcaacctggcgcgcattgccgaaatgaaagcgcagtggcgtgcgctgggc
gaagaggtgctgacgctggtcgggcagtctgacgtcgataagcgcagctacagcagcaaa
aacctgccgctgtgggtcagcaaagtcagcgcctgggcgcagagcgagaccgcggattac
cagattcccgccgagctggcgcgtttcggtcagcaggtgctcaatgaaaaaaccaaaaag
ggcgcgccaccgcagcacccgttgtttgccgccatagatacgttcctggcacagccgctg
tcgctgcgcgatttggtgattgcacgcgcgctggtggaggtgcgtcacgcggtgcgtaaa
gagaaacgcctgcaggcgctgctggggtttgacgatctgctgagccggctggacgaggcg
ctgcaacagcccggcggcgagcagttggcgcaggcgattcgccagcgctttccggtggcg
ctgattgacgaattccaggataccgacccgctgcagtaccgtattttccgcacgctctat
ttacagcagccgcagcatgcgctgctgctgattggcgacccaaaacaggctatctacgcc
ttccgcggtgcggacatctttacctatatccgcgcgcgcagtgaagttcacgcgcactac
acgctggataccaactggcgctcgtcaccggcgatggtggagagcgtcaatcagctgttt
atgcgccagcccgccccgtttctgtttgcggacatcccgtttctgccggtcaatgccgcg
ccgcccaatcagcgtttgtcgctgagtatcgacggcgaggagcaggccgcgctgcgcttc
tggctacagccgggcgcaggctgcagcgtcagcgaataccagcagctgatggcgctgcag
tgcgccgccgatatcagccgctggctgcaggcgggtcagcaacagcgcgcgctgctgggc
aaaacgcccgaccagcggccggtgcaggcctcggacatcacgatactggtacgcagccgg
aacgaagccaatctgattcgcgccgcgctcaatcagctcggcatcccttcggtgtatctc
tccaaccgcgacagcgtgtataccacgcccgaggcgcgagaactgctgtggctgctgcag
gcgatcctcgcgcccgagcaggagcggatgctgcgcaccgcgctggccacgtcgctgttt
gcctttgatgccgcgcagctggacgcgctggatcaggatgcgcgcggctgggatgcgctg
gtggatacttttgcccgctggcagcaattgtggcaccagcgtggcgtactgccgatgctg
cgtcagctgatgctggagcgccagctggcagaaaacctgctggcctcagagaatggcgag
cgtcgcctgaccgatctgctgcacctcggcgaactgctgcaggaggcggcggcccagctc
gacagtccgcacgcgctggtgcgttatctggcgcagcaaattgcccgaccggacagccag
tcggccagccagcagctgcggctggagagcgaccgccacctggtgcagattgtcaccatc
cataaatccaaggggttacagtatccgctggtgtggctgccgtttgccgccggtttccgc
gaggccgatatcgcgctctatcacgaccgcgagcattacaacgcggtgctggatttgcag
aatgatgagcaaagtctggcgctggcagagcaggagcggctggcagaggatttacgcctg
ctgtacgtggcgctgacgcgttcggtgtatcactgcagcgtcggcgtggcaccgctgttt
cgtggcacgcgcaagaaagagggcgagagcgatttacataaaagcgcgctgggtttcctg
ctgcagcgcggtgagccggccaccgcagaacagctggcgagtttactgcacgacatcagc
gtgaccggaaccgaagtggtgctggcgcagccgcagggccatgaacgctggcaggcgctg
gacgaggttgacgatgagctggatgcgcgcagcgtcacgcgcgcgctggccgatccgtgg
cgtgtcaccagctactccgggttgcagcagcacggcagtcaccgtctgctggatgtgatg
ccgggcttcgatgcggaagcggttggagaagatcgcgaggcggaagtgctggaagccgcg
ctgacgccgcaccatttcccgcgtggcgctgcgcccgggactttcctgcatacgctgttt
gaatcgctcgacttcacccagccgccttcagcgccgcagctggaacagcagttgcagcag
agcggctatccgctgcactggcagccgatgctgagcgagtggattacccgcgtggtgaac
acgccgctcaacactgaagggatccggctgagcgacatcacaccgggcaatcgcctgatc
gagatggagttctatctgccgattgatggactgctgacggcaccggcgctggacgcgttg
atgcggcaggatccgctgtcgcgtcaggcgccgccgctcgacttccgtcaggtgcagggc
atgctgaaaggcttcatcgacctggtatttcgctggcagggcaaatactatctgctggat
tacaaatctaactggctgggcgagagccatcaggcatacacaccgcaggcgatggcgcag
gcgatgatcgaccaccgttacgatttgcagtatcagctgtatacgctggcgctgcatcgc
tatttgcagcaccgcctgacgaattacgattatgaacagcattttggcggtgtattctat
ctgtttttacgcggcatggatggcagctcgccagataacggggtgttccatacccgacca
acatcagatttcgtttcacaactggatagcctgtttcgcgggccgggagcagcagcatga
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