Pantoea dispersa: KFZ74_04465
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Entry
KFZ74_04465 CDS
T10176
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pdip Pantoea dispersa
Brite
KEGG Orthology (KO) [BR:
pdip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pdip03009
]
KFZ74_04465 (rlmD)
Enzymes [BR:
pdip01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
KFZ74_04465 (rlmD)
Ribosome biogenesis [BR:
pdip03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KFZ74_04465 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
PCMT
RrnaAD
Methyltransf_25
MTS
TRM5-TYW2_MTfase
Methyltransf_23
Cons_hypoth95
Methyltransf_4
DOT1
Motif
Other DBs
NCBI-ProteinID:
UKY37362
LinkDB
All DBs
Position
1004832..1006148
Genome browser
AA seq
438 aa
AA seq
DB search
MAQFYSAKQRVTTKQRLSVTIDELDPFGQGVARHNGKTLFVSGALPGEQAEVILTEDKRQ
FARGKAKKITQPSPQRQQPRCIHFGVCGGCQQQHVSVALQQESKARALGRMLSQEAALPV
QVDEIISAAPWGYRRRARLGLQWLPKQQRLQMGFRQAGSNDLIDVTQCPVLVPELEALLQ
PLHHCLSNLHAAKRLGHVELVLADNGPLMVLRHLDALSAADRTKLERFSHEHRLMIWLAD
GSDALQALGAEQPYYRSFDLQLTFSPQDFIQVNDGVNQQMVAQAIAWLDLQPDDRVLDLF
CGMGNFTLPLGKFVQNAVGVEGVAALVRQAEYNAQLNNLRNVCFFQHNLEEDVSRQPWAA
QGFNKVLLDPARAGAAGVMSHIVKLAPQRVVYVSCNPTTLARDSQTLLSAGYHLERVAML
DMFPHTSHLESMVLFSKT
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattttactccgcaaaacagcgcgtgacgacgaagcaacgtctcagcgtcacc
attgacgagctcgatccctttggtcagggcgtggcgcgccataacggtaaaacgctgttt
gtcagcggcgcgctgcccggcgaacaggccgaggtgatcctgaccgaagataagcgtcag
tttgcgcgcggcaaagccaaaaagattacacaaccgagcccgcagcgccagcaaccgcgc
tgcatccatttcggcgtgtgcggcggctgccagcagcagcacgtgtccgtggcgctgcag
caggagagcaaagcgcgggcgctgggccgcatgctgagtcaggaagcggcgctgccggtg
caggtggatgagatcatcagcgctgcgccctggggctatcgccggcgcgcgcgtctcggt
ttgcagtggctgccaaagcagcagcgcctgcagatgggcttccgtcaggcgggcagtaac
gatctgattgatgtgacgcaatgccccgttttggtgcccgagcttgaggcgctgctgcag
ccgctgcaccactgtctcagcaacctgcacgcagcgaaacggctggggcatgtggaactg
gtgctggcggataacggtccgctaatggtgctgcgccatcttgatgcgctctccgctgcg
gaccggacaaaactggaacgtttttcgcatgagcaccggctgatgatctggctggcggac
ggcagtgacgcgctgcaggcgctcggtgccgagcagccttactaccgctcgtttgatttg
cagctaacctttagcccgcaggatttcatacaggtcaacgatggcgtgaatcagcagatg
gtggcacaggcgattgcctggctggatctgcagccggacgatcgggtgctcgatctgttc
tgcggcatgggcaacttcacattgccgctaggaaagttcgtacaaaatgcggtgggtgtg
gagggcgttgcagcattagtgcgccaggcagagtataatgctcagcttaacaatctcaga
aatgtctgcttcttccagcacaatttagaggaagatgtctcgcgccagccctgggcggcg
cagggatttaataaggtgttactggatccggcgcgtgccggggccgcgggcgtgatgtcg
catatcgttaaacttgcgccgcaacgcgtggtctatgtttcctgtaacccgacaacactt
gcccgcgacagtcagacattactgtcggcgggctaccatctggaaagggtcgcgatgctg
gatatgttccctcataccagccatctcgaatccatggtgctgtttagcaaaacataa
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