Pantoea dispersa: KFZ74_05060
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Entry
KFZ74_05060 CDS
T10176
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pdip Pantoea dispersa
Brite
KEGG Orthology (KO) [BR:
pdip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pdip03009
]
KFZ74_05060 (srmB)
Enzymes [BR:
pdip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KFZ74_05060 (srmB)
Ribosome biogenesis [BR:
pdip03009
]
Prokaryotic type
rRNA helicases
KFZ74_05060 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
AAA_11
CMS1
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UKY37460
LinkDB
All DBs
Position
complement(1129829..1131157)
Genome browser
AA seq
442 aa
AA seq
DB search
MTVTTFSELELDESLLEALQDKGFTRPTAIQAEAIPAALEGRDVLGSAPTGTGKTAAYLL
PALQHLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHA
EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETRW
RKQTLLFSATLEGDNIKDFAVRLLNDPVAIEADPSKSERKKIQQWYYRADNLEHKTKLLV
HLLKQPEVKRAIVFVRKRERLHELVTWMHEAGLRSSYLEGEMVQANRNEAIKRLNDGRVN
VLVATDVAARGIDIDNVTHVINYDLPRTADVYLHRIGRTGRAGRKGTAISLVEAHDHPLL
GKISRYVNEPLKSRVIDELRPETRAPSAKVTGKPSKKALEKRKEKKAKEEEKPRVKKRHR
DTKNIGKRRKPSGSSTPENGAE
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtaaccacattctccgaactcgaactcgacgaaagcctgctggaagccctgcag
gataaaggcttcacgcgcccgactgccattcaggctgaggccattcctgccgcgctggaa
ggccgtgacgttctgggttcggcaccaaccggaacggggaaaaccgcagcctacctgctg
cccgctttacagcacctgctcgatttcccgcgtaaaaaatcagggccgccgcgcattctg
atcctcacgccgacgcgtgaactggcgatgcaggttgccgaccaggcgcgcgagctggcc
aaacatacccatctcgatatcgccaccatcaccggcggcgtggcctatatgaaccacgcg
gaagtgttcagtgaaaatcaggacatcgtggtcgcaaccaccggccgcctgctgcagtac
atcaaagaagagaactttgactgccgcgcggtagaaacgctgattctggacgaagccgac
cgcatgctggacatgggctttgcgcaggatatcgagaccattgccggtgaaacgcgctgg
cgcaaacagacgctgctgttctcggccacgctggaaggcgacaacatcaaagatttcgcc
gtgcgcctgctgaacgatccggtagcgattgaagccgatccaagcaaaagcgagcgcaaa
aagattcagcagtggtattaccgcgccgacaaccttgagcacaaaaccaaactgctggtg
catctgctgaagcagccggaagtgaagcgtgccatcgtgttcgtacgcaaacgtgagcgc
ctgcatgagctggtgacctggatgcacgaagccggcctgcgcagcagctacctcgaaggc
gaaatggtacaggcgaaccgtaacgaagcgatcaagcgcctgaatgacggtcgcgttaac
gtgctggtcgcgaccgatgtcgccgcgcgcggtatcgacattgataacgtcacccacgtc
atcaactatgacttaccgcgcaccgccgatgtctatctgcaccgcattggccgtaccggc
cgcgccggacgcaaaggtaccgcgatctcgctggtcgaggcacatgaccatccgctgctg
ggtaaaatcagccgctacgtcaacgagccgctgaaatcgcgcgtaatcgatgagctgcgt
ccggaaacgcgtgcaccgagtgctaaagtcaccggtaaaccgtcgaaaaaggcgcttgag
aagcgcaaagaaaagaaagcgaaagaagaagagaaaccacgcgtgaagaaacgtcaccgc
gataccaaaaatatcggtaaacgccgcaagccaagcggcagcagcacgccggagaacggt
gcggaataa
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