Pantoea dispersa: KFZ74_13865
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Entry
KFZ74_13865 CDS
T10176
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pdip Pantoea dispersa
Pathway
pdip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KFZ74_13865 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdip03019
]
KFZ74_13865 (rhlE)
Enzymes [BR:
pdip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KFZ74_13865 (rhlE)
Messenger RNA biogenesis [BR:
pdip03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KFZ74_13865 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
Cullin_binding
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UKY35422
LinkDB
All DBs
Position
complement(2951248..2952654)
Genome browser
AA seq
468 aa
AA seq
DB search
MSFDSLGLNADILRAVAEQGYREPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLL
QRLSEKPAAARGRRPVRALILTPTRELAAQVGENVREYSQYLNMRSLVVFGGVSINPQMM
KLRGGVDVLIATPGRLLDLAHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDEIKALAEKLLTNPEQVEVARRNTASEQVSQQVHFVDKKRKRELLSLMI
GRDNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGGIRVLV
ATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGAALSLVCVDEHKLLRDI
ERLLKREIPRIALPGFEPDPSIKAEPIQNGRQQQPRGRGQGRAPGQGADASRSRSGGNGQ
RASAGNGGARPQGEARAPRRSGNNGPAAGNAGKPARSRRPAAKSNGNA
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgactctctcggcttgaatgccgatattttgcgtgcggtagcagaacagggc
taccgtgaaccgacgccaatccagcgtcaggcgattcccgtggtgctggccggtcgtgac
ctgctggcgagcgcccagaccggcacgggtaaaaccgccggtttcacgctgcctctgctg
cagcgtctgtcagaaaaaccggcagcggcgcgtggtcgccgtccggtacgtgcgctgatc
ctcactccaacccgtgaactggcggcgcaggttggcgaaaacgtacgtgaatacagccag
tacctcaatatgcgttcgctggtggtgttcggcggcgtcagcattaatccgcagatgatg
aaactgcgcggcggcgtcgatgtactgatcgccacgccggggcgtctgctcgatctggcg
caccagaacgcggtcgatctgtcgcaggtggaaatcctggtgctggacgaagcggatcgc
atgctcgacatgggcttcatccacgacattcgccgcgtgctggcaaaactgccggccaaa
cggcagaacctgctgttctctgccaccttctcagacgagatcaaagcgctggcggaaaaa
ctgctcaccaacccggaacaggtagaagtggcacgccgcaacaccgcttccgagcaggtg
tcgcagcaggtgcattttgtcgataagaagcgcaaacgggaactgctgtcgctgatgatt
ggtcgcgacaactggcagcaggtgctggtattcacccgcaccaagcacggtgctaaccac
ctcgctgagcagctcaacaaagatggcatcactgccgccgcgatccacggcaataagagc
cagggcgcgcgtacccgtgcgctggccgacttcaaaaccggcggcattcgcgtgctggtg
gcgacggatattgccgcgcgcggtctggatatcgaagagctgccgcacgtggtcaactac
gagctgccgaacgtggcggaagattacgtgcaccgcatcggccgtaccggtcgtgccgcg
gccaccggtgctgcgctgtcgctggtgtgcgtggacgagcacaagctgctgcgtgatatc
gagcgcctgctgaagcgggaaattccgcgcattgcgctgccgggctttgagccggatccg
agcatcaaggcggagccgattcagaatggccgtcagcagcagccgcgcggacgtggccag
ggccgcgcgccggggcagggtgctgacgcatcgcgcagccgtagcggcggcaatggtcag
cgtgccagcgccggtaacggcggcgcgcgtccacagggcgaggcgcgtgcaccgcgtcgt
tcgggcaacaacggcccggcggcaggtaacgcgggtaaaccggcgcgctcacgtcgtccg
gcagccaagagcaacgggaacgcgtaa
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