Candidatus Pantoea soli: D8B20_02220
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Entry
D8B20_02220 CDS
T06714
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pdis
Candidatus Pantoea soli
Pathway
pdis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D8B20_02220 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdis03019
]
D8B20_02220 (pnp)
03016 Transfer RNA biogenesis [BR:
pdis03016
]
D8B20_02220 (pnp)
Enzymes [BR:
pdis01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
D8B20_02220 (pnp)
Messenger RNA biogenesis [BR:
pdis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
D8B20_02220 (pnp)
Transfer RNA biogenesis [BR:
pdis03016
]
Prokaryotic type
tRNA degradation factors
D8B20_02220 (pnp)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_2
KH_2
OB_PDCD11
OB_RRP5_4th
aRib
KH-I_KHDC4-BBP
DUF5813
S1_RRP5
KH_SLS1_2
KH_NusA_2nd
UPF0181
Spt6_S1
Motif
Other DBs
NCBI-ProteinID:
QDY40794
UniProt:
A0A518X9D6
LinkDB
All DBs
Position
490857..492992
Genome browser
AA seq
711 aa
AA seq
DB search
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT
VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV
NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTADEIKQSRLDLVVA
GTQNAVLMVESEADILTEDQMLGAVVFGHDQQQVVIENINALVAEAGKPRWDWQPEPAND
ALIARVAAFAEARISDAYRITDKQERYAQVGVIKDETIAALLAEDDTLDEAEIGDIVHSL
EKNVVRTRILNGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVAATLGTAR
DAQSLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKQDA
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSD
ILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQA
ISTPRQEISEFAPRIYTIKINSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT
DGLKAKEAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVMEVDRQGRVRLSIKEATEQKPAEEAAAATDAPQAE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
ttgctgaacccgatcgtacgcaaattccaatatggtcagcataccgtcacgctggaaacc
ggcatgatggcacgccaggccactgccgccgtaatggtaagcatggacgacaccgcggta
ttcgttaccgttgttggccagaaaaaagcaaaacctggtcaggacttcttcccgctgacc
gtcaactaccaggagcgtacctacgctgctggccgtatcccgggcagcttcttccgtcgt
gaaggccgtccaagcgaaggcgaaaccctgattgcgcgtctgattgaccgcccggttcgc
ccgctgttcccggaaggcttcgtcaacgaagtgcaggtcattgctaccgtcgtttctgtt
aacccgcaggttaacccggatatcgtggcgatgatcggcgcgtctgccgcgctgtcactg
tcaggtattccgtttaatggcccaatcggcgcagcgcgcgtgggttacatcaacgaccag
tacgtactgaacccgactgctgatgagatcaaacagtcgcgcctggatctggtggttgcc
ggtacccagaacgccgtactgatggtggaatctgaagcggatatcctgactgaagatcaa
atgctgggtgcggtggtctttggccacgatcagcagcaggtggtaattgaaaacatcaat
gcgctggttgctgaagctggcaaacctcgctgggactggcagccggagccggctaacgac
gcgctgattgcacgcgtagcggcatttgctgaagcgcgcatcagcgatgcttaccgcatc
actgacaagcaggagcgttacgcacaggttggcgtcatcaaagacgaaaccattgctgcg
ctgctggcagaggatgacacgctggatgaagccgaaatcggcgatatcgtgcacagcctg
gaaaagaacgtggtccgtacccgtatcctgaacggcgaaccgcgtattgatggtcgtgaa
aaagatatgatccgtggtctggacgtgcgcactggcgtactgccacgtacccacggttct
gcgctgttcacccgtggtgaaacgcaggcactggttgccgctacactgggtaccgcgcgt
gatgcgcagagcctggatgagctgatgggtgagcgcaccgacagcttcctgttccactac
aacttccctccgtactcggtgggtgaaaccggcatggtcggttcaccgaagcgtcgtgaa
attggtcacggccgactggcgaagcgtggcgtgctggcagttatgcctaagcaggacgcg
ttcccgtacaccgtacgtgtggtatctgaaattaccgaatccaacggttcctcttccatg
gcctccgtctgtggtgcgtcactggcgctgatggatgcgggtgtaccgatcaaagccgca
gttgccggtatcgcgatgggtctggtcaaagaagacgagaagtttgtcgtactgtctgac
atcctgggcgatgaagaccacctgggcgatatggacttcaaagtagccggtagccgtgaa
ggtattactgcgctgcagatggacatcaaaatcgaaggcatcacccgcgaaatcatgcag
gtggcactgaaccaggcgaaaggtgcgcgtctgcacatcctgagcgtgatggaacaggct
atcagcacgccgcgtcaggagatctccgaatttgcgccgcgcatttacaccatcaagatc
aattccgacaagatcaaagatgttattggtaaaggcggttcagttatccgtgcgctgacc
gaagagaccggcaccaccatcgaaatcgaagatgatggcaccgtgaaaatcgctgcgacc
gacggcctgaaagcgaaagaagcgattcgccgcatcgaagagatcaccgcagaaatcgaa
gtgggccgcatttacgcaggtaaagttacccgcatcgttgacttcggcgcgttcgttgcc
atcggtggtggcaaagaaggtctggtacacatctctcagatcgctgataagcgcgtagag
aaagtgaccgattacctgcagatgggccaggaagtaccggtgaaagtgatggaagtggac
cgtcagggccgcgtccgtctcagcatcaaagaagccacagagcagaagccagcggaagaa
gcagctgctgcaactgatgcgcctcaggctgagtaa
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