Candidatus Pantoea soli: D8B20_02235
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Entry
D8B20_02235 CDS
T06714
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pdis
Candidatus Pantoea soli
Pathway
pdis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D8B20_02235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdis03019
]
D8B20_02235
03009 Ribosome biogenesis [BR:
pdis03009
]
D8B20_02235
Enzymes [BR:
pdis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D8B20_02235
Messenger RNA biogenesis [BR:
pdis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D8B20_02235
Ribosome biogenesis [BR:
pdis03009
]
Prokaryotic type
rRNA helicases
D8B20_02235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_C
CMS1
Cas3-like_C_2
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QDY40796
UniProt:
A0A518X9U2
LinkDB
All DBs
Position
494185..496077
Genome browser
AA seq
630 aa
AA seq
DB search
MTDIQTTFADLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLNNVDPSVRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITKRFMRDPQEVRIQSSITTRPDISQSYWTAYGRKSDALVRFLE
AEDFDAAIIFVRTKNATLEVAETLERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA
TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE
RTMKLTIPEVELPNAELLSQRRLAQFAAKVQQQLESSDLDQYRALLSKMQPEEELDMETL
AAALLKMAQGERPLILPPDAPRPQRREFRDRDERGDRPRRDRDSRDSRDGDRPRRERRDV
GEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGEVLQ
HFTRTRILNKPMNMQLLGDAQPHERTERRGGGRDFGGERRGSRDGAPRGEGAPRRFSERR
EGGREGGRFSREGSRGPRREEGAVSRRRDA
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgactgatattcaaaccacttttgcagatctgggcctgaacgccgacatccttgaatca
ctgaacggtatgggctatgtgaagccttcgccaatccaggctgagtgtattcctcacctg
ctggcgggccgtgacgtactgggtatggcgcagaccggtagtggtaaaacagcagccttc
tctctgccgctgctgaacaacgttgatccttctgtccgcgcaccacaaatcctggtgctg
gccccaacccgcgaactggcggtacaggtcgctgaagcgatgacagaattctctaaacac
atgcgcggcgtgaacgtggtggccctgtacggtggccagcgttatgacgtgcagctgcgc
gcactgcgtcagggaccacagatcgtggtcggtaccccaggtcgtctgctggaccacctg
aagcgcggcaccctggacctctctaacctgcgtggtctggtactggacgaagccgatgaa
atgctgcgtatgggcttcatcgaagacgtcgaaacgatcatggcgcagattccggaaggc
catcagacggccctgttctctgccaccatgccggaagcgattcgccgcattaccaagcgt
ttcatgcgcgatccgcaggaagtacgcattcagtccagcatcacgacgcgtccggacatt
tcgcagtcttactggacagcttacggtcgcaaatcagatgctctggtgcgcttcctggaa
gccgaagattttgatgcggcgatcatcttcgtgcgcaccaaaaacgcaacgctggaagtg
gctgaaacgctggagcgcaacggttacaacagcgccgcactgaacggcgacatgaaccag
gctctgcgtgagcagacgctggagcgcctgaaagacggtcgcctggacattctgatcgcg
acggacgttgcggctcgtggtctggacgttgagcgtatcagcctggtcgttaactacgac
atcccaatggatgcggaatcttacgttcaccgtatcggccgtaccggtcgtgcgggccgt
gccggtcgcgccctgctgttcgttgagaaccgcgagcgtcgcctgctgcgtaacattgaa
cgcaccatgaagctgacgattccggaagtggaactgccaaacgcagagctcctgagccag
cgccgtctggcgcagttcgctgccaaagtccagcagcagctggaaagcagcgatctggat
cagtaccgtgcactgctgagcaaaatgcagccggaagaagagctggatatggaaacgctg
gccgcagccctgctgaaaatggcacagggtgaacgtccactgattctgccaccggatgca
ccacgtccacagcgtcgtgagttccgtgaccgtgatgagcgtggcgatcgtccacgtcgt
gaccgtgacagccgcgatagccgtgatggcgatcgtccgcgtcgcgagcgtcgtgacgtt
ggtgaaatgcagctgtaccgcattgaagtgggccgtgacgatggcgttgaagtccgtcac
atcgtgggcgctattgccaacgaaggcgacatcagcagccgttacatcggtaacatcaag
ctgttcggtacgcactccactatcgagctgccaaaaggcatgccgggtgaagtcctgcag
cactttacgcgcacgcgtattctgaacaagccgatgaatatgcagctgctgggtgatgca
cagccgcacgagcgcactgagcgccgtggcggtggtcgtgacttcggtggcgagcgtcgc
ggtagccgtgatggcgcaccacgtggcgaaggcgcaccgcgtcgcttctctgagcgtcgt
gaaggtggccgcgaaggcggacgcttcagccgtgaaggtagccgtggtccgcgtcgcgaa
gagggtgccgtttcccgtcgccgtgatgcctga
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