Candidatus Pantoea soli: D8B20_05645
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Entry
D8B20_05645 CDS
T06714
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pdis
Candidatus Pantoea soli
Pathway
pdis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D8B20_05645 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdis03019
]
D8B20_05645 (rhlE)
Enzymes [BR:
pdis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D8B20_05645 (rhlE)
Messenger RNA biogenesis [BR:
pdis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D8B20_05645 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
UvrD-helicase
HEM4
Motif
Other DBs
NCBI-ProteinID:
QDY41409
UniProt:
A0A518XB44
LinkDB
All DBs
Position
1207558..1208961
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AA seq
467 aa
AA seq
DB search
MSFDSLGLNADILRAVAEQGYREPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLL
QRLTEKAAPARGRRPVRALILTPTRELAAQVGENVRDYSQYLNLRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLAHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLAKLPAR
RQNLLFSATFSDEIKALAEKLLNNPEQVEVARRNTASEQVSQQVHFVDKKRKRELLSLMI
GRDNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKSGSIRVLV
ATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGAALSLVCVDEHKLLRDI
ERLLKREIPRIALPGFEPDPSIKAEPIQNGRQQQPRGRGQGQGQGRGQGGGNARPQAGNG
QRPQGGQSARPQSDARPARRQDTAGGQNRGAANSGRRRPAAKNSGNV
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgactctctcggcttgaatgccgatattttgcgtgcggtagcagaacagggc
tatcgtgaaccgacgccaatccagcgtcaggccattcccgtggtgctggctggccgtgac
ctgctggcgagcgcccagaccggtaccggtaaaaccgccggctttacgctgccgctgctg
cagcgcctcactgaaaaagccgcaccggcgcgcggccgccgtccggtgcgtgcgctgatc
ctcaccccgacccgcgaactggcggcacaggtgggcgaaaacgtgcgcgactacagccag
taccttaacctgcgttcgctggtggtatttggcggtgtcagcattaacccgcaaatgatg
aaactgcgcggcggcgtggacgtgctggtggcaacgccaggccgtctgctcgatctggcg
caccagaacgcggtcgatctgtcacaggttgaaatccttgtgctggatgaagccgatcgc
atgctggatatgggctttatccacgatatccgtcgcgtgctggcgaaactgcctgcccgt
cgtcagaacctgctgttctcggccaccttctcggatgagatcaaagcgctggcggaaaaa
ctgctcaacaacccggagcaggttgaagtggcgcgccgcaacaccgcctctgagcaggtg
tcgcagcaggtccatttcgtggataaaaagcgcaagcgcgagctgctgtcgctgatgatt
ggtcgcgataactggcagcaggtgctggtgttcacccgcaccaaacacggcgcgaaccat
ctggcggagcagctgaataaagatggcatcaccgccgccgccatccatggcaacaagagt
cagggtgcgcgtacccgtgcgctggctgatttcaaatccggcagcattcgcgtgctggtt
gccaccgatatcgccgcgcgcggcctggatattgaagagctgccgcacgtggttaactat
gagctgccaaacgtggcggaagattacgtgcaccgcatcggccgtaccggtcgtgccgcg
gccaccggtgcggcgctgtcgctggtgtgtgtcgacgagcataaactgctgcgcgacatt
gagcgcctgctgaagcgtgaaattccccgtattgccctgccgggctttgagccggatccg
agcatcaaagcggaaccgattcagaacggtcgtcagcagcagccacgcggccgcggtcag
ggccaggggcagggacgcggtcagggcggcggcaatgctcgtccgcaggcgggcaatggt
cagcgtccgcagggcggacagagcgcccgtccgcagagtgacgcgcgtccggctcgtcgt
caggacaccgccggcggccagaaccgcggtgcggcgaacagcggtcgtcgtcgtccggcg
gcgaagaacagcgggaacgtctga
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