Candidatus Pantoea soli: D8B20_05985
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Entry
D8B20_05985 CDS
T06714
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
pdis
Candidatus Pantoea soli
Brite
KEGG Orthology (KO) [BR:
pdis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pdis03009
]
D8B20_05985 (rimO)
Enzymes [BR:
pdis01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
D8B20_05985 (rimO)
Ribosome biogenesis [BR:
pdis03009
]
Prokaryotic type
ribosomal protein modification factors
D8B20_05985 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
TRAM
CLP1_P
YajR_YAM
Motif
Other DBs
NCBI-ProteinID:
QDY41466
UniProt:
A0A518XBL1
LinkDB
All DBs
Position
complement(1287344..1288669)
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AA seq
441 aa
AA seq
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MSHVKNPPRVGFVSLGCPKNLVDSERILTELRTEGYDVVPRYDDAEIVIVNTCGFIDSAV
QESLEAIGEALNENGKVIVTGCLGAKVDQIREVHPKVLEITGPHSYEQVLSHVHTYVPKP
EHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLDSRPIGAVLDEAKR
LVEAGVKELLVISQDTSAYGVDVKHRTGFWNGAPVKTSMVGLCEQLAKLGVWVRLHYVYP
YPHVDDVIPLMAEGKILPYLDIPLQHASPRILKLMKRPGAVERTLERIKRWREICPELTL
RSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFQYSPVEGATANQLPDQVPDAVKQARF
DRFMQLQQQISAERLQEKIGREILVIIDEVDEEGAVGRSMADAPEIDGAVYLNGDRQVKV
GDVVRVKVEHADEYDLWGSRV
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgagccatgtcaaaaatccgccgcgcgtggggttcgtttccctcggctgtccgaaaaac
ctcgttgactctgaacgcatcctgacggaactgcgtactgagggttatgacgtggtgcca
cgctacgatgatgcggagatcgtcatcgttaatacctgtggatttattgacagcgccgta
caggaatcactggaagcgattggtgaagcgctgaatgaaaacggcaaagtgatcgtgacc
ggctgtctcggtgccaaagtggatcagatccgcgaagtgcatccgaaggtactggagatc
accggcccgcacagctatgaacaggtgctgtcgcacgtgcacacctatgtgccgaagccg
gaacacaatccgttcctgagcctggtgccggaacagggtgtaaagctgacgccgcgtcac
tacgcctacctgaaaatttctgaaggctgtaatcaccgctgcaccttctgcattattccg
tcaatgcgtggcgacctcgacagccgtccaatcggtgccgtgctggatgaagccaaacgt
ctggtggaagcaggcgtcaaagagctgctggtgatctcccaggacacctccgcctacggc
gtggatgtcaaacaccgtaccggcttctggaacggggcgccggtgaaaaccagcatggtc
ggtctgtgtgagcagctggcaaaactcggcgtctgggtgcgcctgcactatgtttatccc
tacccgcacgttgatgacgtcattccgctgatggcggaaggcaaaattctgccctacctg
gatattccgctgcagcacgccagcccgcggatcctcaagctgatgaagcgcccgggcgcc
gtggagcgcacgctggagcgcatcaagcgctggcgcgaaatctgtccggagctgacgctg
cgctcgacctttattgtcggcttcccgggcgagaccgaagaagatttccagatgctgctc
gatttcctgaaagaagcccgtctggatcgcgtcggctgcttccagtacagcccggtagaa
ggcgccacagcaaaccagctgccggatcaggtgccggatgcggtgaagcaggcgcgtttc
gatcgctttatgcagctgcagcagcagatctccgccgagcgtctgcaggagaaaattggc
cgggaaattctggttatcatcgacgaagtggatgaagaaggggccgttggccgcagcatg
gctgacgcgccggaaatcgacggtgccgtctatcttaacggcgaccgtcaggtgaaggtg
ggtgacgtggtgcgggtgaaagtcgagcacgccgacgagtacgatctctggggttcgcgc
gtttaa
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