Candidatus Pantoea soli: D8B20_06890
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Entry
D8B20_06890 CDS
T06714
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pdis
Candidatus Pantoea soli
Pathway
pdis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D8B20_06890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdis03019
]
D8B20_06890
03009 Ribosome biogenesis [BR:
pdis03009
]
D8B20_06890
Enzymes [BR:
pdis01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
D8B20_06890
Messenger RNA biogenesis [BR:
pdis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D8B20_06890
Ribosome biogenesis [BR:
pdis03009
]
Prokaryotic type
rRNA processing factors
D8B20_06890
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
CHP02642
Motif
Other DBs
NCBI-ProteinID:
QDY41632
UniProt:
A0A518XBS2
LinkDB
All DBs
Position
complement(1482320..1485586)
Genome browser
AA seq
1088 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSALELPEGMGLIVRTAGVGKSAESL
QWDLSFRLKHWEAIKKAAETRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKDNTKEVHAIVPVQVASYLLNEKREAVSAIEKRQGGVRAIIVPNDQME
TPHYSVLRVRKGEETQTLSYHLPKLHEAEMALPSEEEHAERRRPEQPALAAFVMPDAPPA
PVEVTEESQPVTKAEVKPQVTAAAAPAATTGNGFVARLLGGLKKLFAGDEPAAAPAEVKT
ETKAAEAETDNGQQRGDRRNNRRNNRRERTPRNGENQQAREGREPREAREPREPREAREP
RDQDNRRNKRQSEPRGERPALTEEQLQQRDEQQQQRREQRAERQRRRQEEKRAQQQEQKA
AEQVVQNDVVEEPVAQEEERVQVMPRRKQRQLSQRVRVGDTAELQTAGMPAATATEAAEE
STPRVQAPEQADVAGEEQDDRDSASMPRRSRRSPRHLRVSGQRRRRYRDERYPSQSPMPL
ETAAASPEMASGKVWVTYPVAQTQEEQNAQDAVQETPDYSREETAAAVALPVAAESNAQP
AAETADAAVHQAEPQAPAEVPVVNTDNLAPVSAPVNHEPAVISAADEAVANQTADAAEPA
ATAEDATPTEKSAAAVADQAPADVSPAVEAEVEAVLSAPVAAEAPVAPVTEPHAPVAARD
TAVSEADTRFKYHATAPMTKAPAPAWEPEPVRHSDWVRPPFSFDGRGSAGGHSATHHATA
PATRPENG
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcagcaggaggagttgcgcgttgcccttgttgac
ggacaacgtctgtacgatctggatatcgaaagccccggacacgaacagaaaaaagccaac
atttacaaaggtaaaatcacccgtattgaacccagcctcgaagctgcgtttgttgattac
ggcgctgagcgtcacggtttcctccctctgaaagaaatttcccgcgaatacttcccagct
aattacaacgcgcatggccgtccgaatattaaagacgtgctgcgtgaaggtcaggaagtg
atcgtacaaatcgataaagaggagcgcggtaataaaggtgcagcactgacaacctttatt
tccctggccggcagctatctggtgctgatgccaaacaacccccgcgccggagggatctcc
cgccgtattgaaggggatgaccgcaccgaactgaaagaagccctctccgcgctggaactg
ccggaaggcatggggctcattgtccgcaccgccggcgtgggtaaatctgccgaatccctg
cagtgggatctcagcttccgtctgaaacactgggaagcgatcaaaaaagccgcggaaacc
cgccctgctcccttcctgattcaccaggaaagcaacgtcattgtgcgcgctttccgtgac
tacctgcgtcaggatatcggtgaaattcttatcgataacccgaaagtgctggagctggcc
cgtcagcacatcgctgcgctgggtcgtccggacttcagcagcaaaatcaaactctatacc
ggtgaaatcccgctgttcagtcattaccagattgaatcgcagattgaatccgcgttccag
cgtgaagtgcgcctgccttccggcggctccattgtgattgacagcaccgaagcgctcacc
gcgatcgatatcaactccgctcgcgccacgcgcggtggggacatcgaagaaaccgcattc
aataccaacctggaagcggccgatgaaatcgcccgccagctgcgtctgcgcgacctgggc
ggcctgatcgttatcgacttcatcgatatgacgccggtccgtcaccagcgtgcggtggaa
aaccgcctgcgcgaagcggtgcgtcaggatcgtgcgcggattcagatcagccacatttca
cgctttggcctgctggagatgtcgcgtcagcgtctcagcccgtcgctgggcgaatccagc
catcacgtctgcccgcgctgtagcggtaccggcaccatccgtgataacgaatcgctgtcg
ctctccattctgcgtctgatcgaagaagaagcgctgaaagacaacaccaaagaagtgcac
gccattgtgccggtgcaggtggcgtcctatctgctgaacgaaaaacgcgaagcggtcagc
gcgattgaaaaacgtcagggcggcgtgcgcgccatcatcgtgccaaacgatcagatggaa
acgccacactactctgtgctgcgcgtgcgtaaaggtgaagagacacaaaccctctcctac
cacctgccgaagctgcacgaagcggaaatggcgctgccttctgaagaagagcacgctgag
cgtcgtcgtccggagcagccggcactggcggccttcgtgatgccggatgcgccaccagca
ccggttgaagtcaccgaagagagccagccggttaccaaagccgaggtcaaacctcaggta
actgcggcagcagccccggcggccaccaccggtaacgggttcgtggcgcgtctgctgggt
ggtctgaaaaaactgtttgccggtgatgaacctgccgctgcgccagcggaagtgaaaacc
gaaaccaaagccgctgaagcggaaaccgacaatggccagcagcgtggcgatcgtcgtaac
aaccgccgcaataatcgtcgtgagcgcaccccgcgtaacggtgaaaaccagcaggctcgt
gaaggccgtgagccacgtgaagcgcgcgaaccgcgtgagccacgtgaagcccgtgagccg
cgcgatcaggataaccgtcgcaacaaacgtcagagcgagccgcgcggtgagcgtccggcg
ctgaccgaagagcagctgcagcagcgtgatgagcagcagcagcagcgtcgtgaacagcgt
gctgagcgtcagcgtcgtcgtcaggaagagaagcgtgcgcagcagcaggagcagaaagcc
gctgagcaggtggtacagaatgacgtcgttgaagagccggttgcacaggaagaagagcgc
gttcaggtgatgccgcgccgtaagcagcgtcagctgagccagcgcgtgcgcgtaggtgat
accgctgagctgcagacggccgggatgccagccgccacggcaactgaagccgctgaggaa
agcacgccgcgcgttcaggctcctgaacaggctgatgtagccggtgaggagcaggatgac
cgtgacagcgccagcatgccgcgccgttcgcgtcgctcgccacgccacctgcgcgtgagt
ggtcagcgtcgtcgtcgctaccgtgacgagcgctacccgtcgcagtcgccaatgccgctg
gaaaccgctgctgcgtcaccggaaatggcttccggtaaagtctgggtgacttacccggtt
gcgcagacgcaggaagagcagaacgcacaggatgcggttcaggagacgccggactacagc
cgcgaagagaccgcagcagcggttgcgctgccggtcgctgcggagtcgaacgcgcagcct
gctgcagaaaccgcagatgcggccgttcatcaggcggaaccgcaggcacccgcagaggtt
ccggtcgtcaatactgacaacctggcgccggtctctgccccggtaaaccacgagccggcg
gtgatttctgccgcagatgaagccgtggcaaaccagaccgctgacgcagctgaaccggct
gcgaccgctgaagatgcaacgccgacagaaaaaagtgctgccgccgtggcggatcaggcg
ccggctgacgtatcgcctgcggtggaagcggaagtcgaagcagtgctgtcagccccggtg
gcggcagaggcaccggttgcgccggtgaccgagccacatgcaccggttgcggcacgtgac
accgcggtatctgaggcggatacccgctttaaatatcacgccactgcgcccatgaccaaa
gcgccagccccggcgtgggagcctgagccagtgcgccacagcgactgggtccgtccaccg
ttcagctttgacggtcgcggctctgccggtggtcacagcgccacacaccatgcgacagct
ccggcgacccgcccggaaaatggctga
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