Candidatus Pantoea soli: D8B20_09060
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Entry
D8B20_09060 CDS
T06714
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pdis
Candidatus Pantoea soli
Brite
KEGG Orthology (KO) [BR:
pdis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pdis03016
]
D8B20_09060
Enzymes [BR:
pdis01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
D8B20_09060
Transfer RNA biogenesis [BR:
pdis03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
D8B20_09060
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
ODP
Motif
Other DBs
NCBI-ProteinID:
QDY42034
UniProt:
A0A518XCU1
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All DBs
Position
1954140..1956074
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKEKLHAQTPRAEGVVKGTEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI
SAVIHTDKDRESAEPEALIEPFLTRFVGRVQKKDDRLSIVPDHPLLKDAIQCRAVRGLTH
DFQNGDWAVAEMRRHPLKGDRGFYAELTEFIVTADDHLAPWWVTLSRHNLEREAPEVGFG
EMLDEQLQREDLTALNFVTIDSASTEDMDDALYVEETAEGNLLLTIAIADPTAYVAEGSE
LDKLAARRAFTNYLPGFNIPMLPRALSDDVCSLRPNVKRPALACRVTVLADGSLADDVHF
FAAWIESKAKLVYDEVSDWLENSGSWQPESDAIAQQIRLLHRLCLARGEWRQTHALVFKD
RPDYRFVLGEKGEVLDIIAEPRRIANRIVEEAMILANVCAANVLQQKLGFGIYNLHTGFD
LANAEQAAGVLAGHGITVDPQAITTLEGFRQLRRELDAQPTQYLDSRIRRFQSFAEISTE
PGPHFGLGLEAYATWTSPIRKFGDMINHRLLKAIVRGESIARPQDEVTVTMGERRRLNRM
AERDVGDWLYARFLAPFAGTDRKFSAEIIDVSRGGMRVRLQENGAVAFIPAPFIHAVRDE
LVCSQENGTVQIKGEVAYRVTDIIDVTIAEVRMETRSVVARPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgttccaggataacccgctgctcgcgcagctgaaagagaagcttcacgcgcagacgccg
cgcgccgaaggtgtagtaaaaggcacggaaaaaggctttggcttcctcgaagttgatgct
cagaaaagctacttcatcccgccgccgcagatgaaaaaagtgatgcacggtgaccgtatt
tctgcggtaatccacaccgataaagatcgcgagagcgcggagccggaagccctgattgag
ccgttcctgacgcgctttgtcggccgcgtgcagaagaaagatgaccgtctttctatcgta
ccggatcatcctttgctgaaagacgccattcagtgccgcgcggtgcgtggactgacgcac
gatttccagaacggcgactgggccgttgctgaaatgcgccgccatccgctgaaaggcgac
cgcggcttttatgctgaactcaccgaattcattgtcaccgcagatgaccatcttgcgccg
tggtgggtcacgctctcccgccataacctggagcgcgaagcgcccgaagtcggctttggc
gagatgctggacgaacagctgcagcgtgaagacctcaccgcgctgaacttcgtgaccatc
gacagcgccagcaccgaagatatggatgatgcgctgtatgtggaagagaccgcggaaggc
aatctgctgctgaccatcgccattgccgatcccaccgcttatgtcgcggaaggcagcgag
ctggacaagctggccgcccgccgtgccttcaccaactatctgccaggcttcaacattccg
atgctgccacgcgcgctgtcagacgatgtctgctcgctgcgtccaaacgtaaaacgtccg
gcgctggcgtgtcgcgtgaccgtgctggccgatggcagcctggcggacgacgtgcacttc
ttcgcggcgtggatcgaatccaaagccaagctggtgtacgacgaagtgtctgactggctg
gaaaacagcggcagctggcagccggaaagcgacgccatcgcgcagcagattcgcctgctg
catcgcctgtgcctggcgcgcggtgaatggcgccagacccatgcgctggtgtttaaagat
cgcccggactaccgcttcgtgctgggtgagaaaggtgaagtgctggatattattgccgag
ccgcgccgcatcgccaaccgtatcgtggaagaggcgatgattctggctaacgtctgtgcg
gcaaacgtgctgcagcagaagctgggctttggcatttataacctgcacaccggctttgat
ctggccaacgctgagcaagctgccggcgtgctggcgggccacggcattaccgtggatccg
caggcaatcaccacgctggaaggtttccgccagctgcgtcgcgagctggatgcccagcca
acgcagtatctggacagccgcatccgtcgcttccagagctttgcggagatcagcaccgag
cccggcccgcactttggcctggggctggaggcatacgccacctggacttcgcctatccgt
aaattcggcgacatgatcaaccatcgtctgctcaaggcgattgtgcgcggtgaaagcatt
gcgcgtccgcaggatgaggtgacggtcaccatgggcgaacgccgtcgtctgaaccgcatg
gcggaacgtgacgtgggcgactggctctatgcacgcttccttgccccctttgccggtacc
gatcgcaaattcagcgcagagatcatcgatgtctcacgcggcggaatgcgcgtgcgcctg
caggaaaacggcgcggttgcctttatccctgccccgttcattcacgccgtgcgcgacgaa
ctggtgtgctcccaggaaaacggcactgtgcagatcaaaggtgaagtcgcttatcgcgtc
accgatatcattgacgtgaccatcgccgaagtgcgtatggaaacgcgcagcgtggtggcc
cgccccgccgcctga
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