Candidatus Pantoea soli: D8B20_10610
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Entry
D8B20_10610 CDS
T06714
Name
(GenBank) type IV secretion protein Rhs
Organism
pdis
Candidatus Pantoea soli
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
PAAR_motif
DUF6531
WHH
RHS
Colicin-DNase
DUF4595
Motif
Other DBs
NCBI-ProteinID:
QDY42316
UniProt:
A0A518XE28
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Position
2268422..2272633
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AA seq
1403 aa
AA seq
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MFEAARVGDDIGHSHALAGMIAGTIVGGLIAAAGGIAAGALMIAGIGASCLGIGVLLVGT
SLAVGYFTGELATKARDSIADAGAASMAKEGIIATGSHNVFINGRPAALATNSMVECARD
AGSQQMAEGSSRVYINGLPAARLGDQTTCGGKVMTGSADVIIGGEPEQTLPIQSEVPEWL
YKASDMTLLFAGLLGGAGGAAGKVGALGKLLSKIPGINKLARVACRAGVLMTSAAAVGII
ARPVDIVSGQKFLAGDDELDFVLLSRLPVVWQRYWRSGNPGDSVLGRGWSLFWETRLEKY
HDGLVWRAPSGDYVPFPLVPKGQRTFCEPEKRWLEHHQDDTWSVYDISGERWCYSPLRNN
SPSLPLRLTEPCGNDILFDWNDDHTLHALTDSAGQRVVCHYQTASGQNRLAGVWLDDEIC
LVSYRYDDKARLMSVTGRGGQVRRRFSWYDDGDGTDLLRSHEDSNGLLNEYLWRNIDGLP
RVVAYRNSAGEQLDFEYDFMNGTRRAIREDGAQAHWLVDDDDDVARFTDYDGRQTGFVCR
DGELCDIILPDGAMRRSQWDRYGRLTSETDPAGRTTEYYWFRNTDRITRTVFPDSTATQS
VYDLNGRLLSETDALNHTTTYHYPDEEETLPDRITDARGGDVLLVWNHQGLLTQRTDCSG
SVTRFTYDRFGQLITSEDAEGNLTRREWNDAGQLTAVIRADGSHETLRWNEHGQLAAWRD
PLESEVRWHYSALGLPESVTDRTGRTRRWHYDPRGNLLRLENGNGGEYRFTYDPTGHPLS
EDRPDDTIRQMEWNARGLLTTLMESGRPDDDGGIPRRAQQFSYDSSGLLTTRTTRDAQYH
YQRNNSGQLTGLTRKPTADGMARGIEADEIQFTFDAAGNLLAEQGANGELHSAYDVLGNL
TALTLPGGQQISWLHYGSGHVSAIRFNQQIISELTRDRLHREVARTQGTREQTRQYDSLG
RRTRQRSFTPDLPEQTIFERAFSYTGRGELSDVSDTLRGNTIYGYDEEGRFLRHYEARPD
HTNRTFRYDAADNLLPDNDLPALPLRDNRLTHWQNLFMKYDWWGNLVSRRSGLYEQHYEY
DAENRLIRAEGTGPEGRFTAHYHYDGLGRRTRKTITTQHGTTETRFLWQGLRLLQEQQQN
GQCQTYVYDPNETYSPLARIDHLRDENSGEVLWFTTDLNGAPLDITDEQGQLRWSGHYGS
FGEVARQTEGFHRLAQQTALAHQPLRYAGQYADNETGLHYNLFRYYDPKIGRFTVQDPIG
LQGGWNLYQYAPNPLGWIDPWGLSRYPGVDFSGSDALYPHGENIVKIPMTGSRYGDFKAA
NELANYKNSVGNITGKSHPDGYTWHHLNDYDPITNTSTMQLVETSAHEATFPHSGSVSQY
EQYHGVKYESLEAKKTAKSLNCK
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaagcggcacgcgtgggtgatgatattggccattctcatgcgctggcagggatg
attgccggtacgattgtcggtggactgattgccgcagcagggggtattgccgccggggcc
ttgatgattgccggtatcggtgcgtcatgcctgggtataggtgtgctgctggtcggcacc
agcctggcggtggggtattttacgggcgaactggcaacgaaggccagagacagcattgcg
gatgccggggccgccagtatggcgaaggaaggcattatcgccaccggctcgcataacgtg
ttcattaatggcagacctgccgcccttgccaccaatagcatggtggaatgtgcccgggat
gctggctctcagcagatggctgaaggctcctcacgcgtttacatcaatggcctgcctgct
gcccgcctcggcgatcagaccacctgtggtggtaaggtcatgaccggttccgcagatgtg
attatcggcggtgagccggaacagaccctgccaatacagtcagaagtcccggaatggctc
tataaagcctctgacatgacgctgttatttgccggactgctcggtggcgcgggcggagca
gcaggcaaagtcggggcgctgggaaaactgctcagtaaaattccgggtatcaacaaactg
gcccgcgtcgcctgtcgcgctggtgtgctgatgaccagtgccgccgccgtggggattatc
gcccgcccggtcgacattgtcagcgggcagaagtttctcgccggtgatgacgaactggac
tttgtattactgtcccgtctgccggttgtctggcagcgttactggcgcagtggtaatccc
ggcgacagcgtgctgggccgtggctggtcacttttctgggaaacccgacttgaaaaatat
cacgacgggctggtgtggcgtgcaccgtccggtgattacgttccctttcctctcgtgccg
aaaggacagcgaaccttctgtgaaccggagaagcgctggctggaacaccatcaggacgat
acctggtcagtgtatgacatcagcggcgaacgctggtgttactcacctctgcgtaacaat
tccccttccctgccgctgcgactcaccgaaccctgtggtaacgatattctttttgactgg
aatgacgaccataccctgcatgcactcaccgacagcgccgggcagcgcgtagtctgccat
tatcagaccgccagtggccaaaaccgccttgccggagtctggctggatgatgaaatctgc
ctggtcagctaccgctacgatgacaaggccaggctgatgagcgtcaccggacgcggcggt
caggtacgccgccgtttcagctggtatgacgacggggacggtacggatttactgcgcagc
catgaggacagcaacgggcttctgaatgaatacctgtggcggaacattgatggtctgccg
cgcgtggtagcatatcgcaacagcgcgggcgagcagcttgattttgaatacgattttatg
aacggcacccgtcgcgccatccgcgaagatggcgcacaggcacactggctggttgacgac
gatgacgatgttgcacgtttcaccgattatgacggtcgccagaccggcttcgtctgtcgt
gatggcgagttgtgcgacattatcctgcccgatggagccatgcggcgcagtcagtgggac
cgttatggccgtctcacgtcagaaactgacccggcaggacgcaccactgagtattactgg
ttcagaaacactgatcgcattacccgaacagttttcccggattcaacagccactcagtct
gtatatgacctgaacggtcgcctgctgtcggaaaccgatgcactgaatcacaccaccacg
tatcactaccctgatgaagaagaaacgctgcctgaccgcatcaccgatgcgaggggcgga
gacgtgctgctggtgtggaaccatcagggactgctgacgcaacgcactgactgctccggc
agcgtgacccgctttacctatgatcggttcggtcagcttatcaccagtgaggacgccgaa
ggcaacctcacacgccgcgaatggaacgatgcaggacagcttaccgccgtcattcgggct
gatggcagtcatgaaacgttacgatggaacgagcatgggcaacttgcggcctggcgagac
ccgctggaaagtgaggttcgctggcactattccgcgcttggactgccagaaagcgttacc
gaccgcacgggacgaacccgccgctggcactatgatccgagaggcaatctgctgcgtctg
gaaaacggcaacggtggcgagtaccgttttacatatgacccgacaggccaccctctgagc
gaagaccgcccggacgacaccatccgtcagatggaatggaacgcgcgtggactgctcacc
acgctgatggaaagcggcaggccggacgacgatggcggcatcccgcgacgcgctcagcag
ttcagctatgacagtagcggcctgctgaccacacgcactacccgtgatgctcagtaccat
taccagcgtaacaacagcgggcagcttaccggcctgacccgcaagccaaccgccgatggc
atggcgcggggaattgaagcagatgaaattcagtttacctttgacgcggcaggaaacctg
ctcgctgaacagggagccaacggtgaactgcattctgcgtatgacgttctgggtaatctt
actgcgctgaccctgcccggcggccagcagataagctggctgcattacggttccggccac
gtcagtgccatccgctttaatcagcaaatcatatccgaattgacccgcgaccgccttcac
agggaggtggcccgcactcagggaacccgtgaacagacccgccagtatgacagtctcggc
agacgtacccggcagcgcagcttcacacccgacctgccggaacagacaatcttcgaacgc
gccttcagctacaccgggcggggggaactatcagacgtcagtgacaccctgcgtggcaat
acaatttatggctatgatgaggaaggccgttttctcaggcactacgaagcccgcccggac
cacactaacaggacgttccgctacgacgctgcggataacctgctgccggataatgacctc
cctgccctgccgctgagggataaccgcctgacgcactggcagaacctgtttatgaaatat
gactggtggggtaacctcgtcagtcgccgaagtggtctgtatgaacagcattatgaatac
gacgcggaaaaccggctgatacgggcagaaggcaccggaccggaaggccgatttaccgca
cactaccattatgatggactgggccgccgcacccgcaagacgatcaccacacaacacggc
accacggagacgcgcttcctctggcagggcttgcgactgttgcaggaacagcagcagaac
gggcaatgccagacctatgtttacgacccgaacgaaacatacagcccgctggcgcgtatt
gaccatttgcgtgacgaaaatagtggggaggttctgtggttcacaaccgatctgaacggt
gcaccgctggatatcactgatgaacagggacagctccgatggagcggtcattacgggagt
tttggtgaggttgcacggcagacggaaggcttccacagactcgcgcagcaaactgccctc
gctcatcagccactgcgctatgccgggcagtacgcggacaatgaaacgggtctgcactat
aatcttttcaggtattacgatcctaagattggacgctttacggttcaagaccccatagga
ttacagggaggctggaatctttatcagtatgctccgaatccgctgggttggattgatccg
tggggactgtcaagatatcctggggtcgatttctcaggaagcgatgcactttatcctcat
ggtgaaaatattgtaaaaataccaatgacaggcagtcgttatggcgactttaaggcagca
aacgaattggcaaattacaaaaactcagttgggaatattacaggtaaatcacatccagat
ggctatacctggcaccatttaaatgattatgatcccataacgaatacttctaccatgcaa
cttgtagagacaagcgctcatgaagccactttccctcactccggctcagtgagccaatat
gaacagtatcatggtgttaaatatgaatcacttgaagccaagaaaactgcaaaatcattg
aattgtaaatag
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