Candidatus Pantoea soli: D8B20_15515
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Entry
D8B20_15515 CDS
T06714
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
pdis
Candidatus Pantoea soli
Brite
KEGG Orthology (KO) [BR:
pdis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdis03019
]
D8B20_15515 (csrD)
Messenger RNA biogenesis [BR:
pdis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
D8B20_15515 (csrD)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
8xMP
DUF4900
Motif
Other DBs
NCBI-ProteinID:
QDY43196
UniProt:
A0A518XGI9
LinkDB
All DBs
Position
complement(3356796..3358742)
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AA seq
648 aa
AA seq
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MRLTTQFSAFITLLSLLAMLLMLVGCAFSFIWLSQQRVENRVNTLATEVDSALATQSPQE
LSRWLTRLMPVINAEQIELRNGDKTVFQLSRHENPMLEDEPNRFIQFDLPLAHSPDLQLR
VVVLDPAKTWFRSFTGAYTLIVLLTVVAIMSSLLLMTHRWLNRRWQNMERLEARAQRILA
GDRTPRSDNHAEWPPKASRAMDALLNDLQEAGEQRLRIDTLIRTFAAQDSRTGLNNRLFF
DNQLATLLEEQEDVGTHGVVMMVRLPDLETLHETLGPTLVEEYLFDLINMLSTFVLRYPG
ALLARYFRSDFAVLLPHRTLKEANSIADQLVNAVDSLPPMRMIDRDDLIHIGISAWRSGQ
SVSQVMENVELATRRAALQGGNNWSVGEGNTLDMGRGSVRWRTLLENTLNRGGPRLYQKP
AVLMDGKVHHRELLARIFDGDKEVVAGEFMPLVLQLGLADSWDRQLVMRIAALSEVWPDE
TLALPVNIDSLLQRPFQRWLQKLLLQCHKSQRKRFLFELAEADVCQHLNRLVPVFRMLTA
FGCRIAVDQAGLTVVSSAYIRQFPIEVIKLDPGLVRNIDRRTENQLFVQSLLEVCKSART
QVFAAGVRTRAEWQTLAGLGVAGGQGDFFAPSLPVNSNVKKHSQRYRI
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgcgattaacaactcagttttctgcgtttattacattattaagcttactggcaatgtta
ctgatgctggtgggctgcgcttttagttttatctggctgtcgcagcagcgggtagaaaac
cgggtgaacacactggccactgaggtcgacagcgcccttgccacgcaatctccgcaggag
ctgtcacgctggctgacgcgcctgatgccggtgatcaacgccgagcagattgaactgcgt
aacggtgacaaaaccgtttttcagctgtcacgccatgaaaaccccatgctggaagatgaa
cccaaccggttcattcagttcgatttaccgctggcgcattcgcccgatctgcagctgcgg
gttgtggtgctggatccggcaaaaacctggtttcgctctttcaccggggcgtacaccttg
attgtgctgctcacggtggtggcaatcatgtcatcgctgctgctgatgacgcaccgctgg
ctgaaccggcgctggcagaatatggagcggctggaggcgcgggcacagcgtattctggcg
ggtgaccgcacaccgcgcagcgacaaccatgccgagtggccgccgaaagccagccgcgcc
atggacgcgctgctcaatgatctgcaggaagccggagagcagcggctgcgcattgacacc
ctgatccgcaccttcgcggcacaggattcccgcaccggcctcaacaaccgtcttttcttt
gataatcagctggccacgctgctggaagagcaggaagacgtgggcacgcatggcgtcgtg
atgatggtacgcctgcccgaccttgaaacgctgcacgaaacccttggccccacgctggtg
gaagagtatctgttcgatttgatcaacatgctgtcgacctttgtgctgcgctatcccggc
gcgctgctggcgcgctacttccgcagcgattttgccgtactgctgccgcaccgcacgcta
aaggaagccaacagcattgcggaccagctggtcaacgcagtggattcgctgccgccgatg
cgcatgattgaccgcgacgatctgattcacatcggcatcagcgcctggcgcagcgggcaa
agcgtgtctcaggtcatggaaaacgtcgaactggcgacgcgtcgcgcggcgctgcagggc
ggtaataactggtcagtcggagagggcaacacgctggatatggggcgcggcagcgtgcgc
tggcgtacgctgctggaaaataccctgaaccgcggcggcccgcgcctctatcagaaaccg
gcggtactgatggatggcaaagtgcatcatcgtgagttgctggcgcgtatttttgacggc
gataaagaggtggtggccggcgaatttatgccgctggtactgcaactgggcctggctgac
agctgggatcgccagctggtgatgcgcattgccgcgctgtctgaggtgtggccggacgaa
acgctggcgctgccggttaatatcgattccctgctgcagcggccgttccagcgctggctg
cagaaactgctgctgcagtgccataagagccagagaaaacgctttttatttgaacttgca
gaggcagatgtgtgtcaacacctcaaccggctggttccggtctttcgcatgctgacggcc
tttggctgccgtattgcggtagatcaggccggattaacggtggtcagcagcgcctatatc
aggcagtttccgattgaggtgatcaagcttgatccgggcctggtgcgcaatatcgatcgt
cgcaccgaaaatcagctgtttgtacagagtctgctggaagtgtgtaagtcggcgcgtact
caggtgtttgccgccggggtgcgtacccgtgcggagtggcagacgctggccgggctgggc
gtggcaggcggacagggcgacttctttgcgccgtcgctgccggtaaacagtaatgtgaaa
aaacattcacaacgctaccggatttaa
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