Candidatus Pantoea soli: D8B20_17010
Help
Entry
D8B20_17010 CDS
T06714
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pdis
Candidatus Pantoea soli
Pathway
pdis03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pdis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
D8B20_17010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdis03400
]
D8B20_17010
Enzymes [BR:
pdis01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
D8B20_17010
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
D8B20_17010
DNA repair and recombination proteins [BR:
pdis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
D8B20_17010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Auto_anti-p27
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
QDY43473
UniProt:
A0A518XH01
LinkDB
All DBs
Position
complement(3656716..3657525)
Genome browser
AA seq
269 aa
AA seq
DB search
MPELPEVETSRRGIEPHLAGETILHAIVRNPRLRWPVSHEIHTLSDQPVLSVQRRAKYLL
LELPHGWIIIHLGMSGSLRVLPGEQPAAKHDHVDLVMSNGKVLRYTDPRRFGAWLWAPDL
AGSSVLAHLGPEPLSDTFSGAWLFEKSRGKRTVIKQWLMDNKVVVGVGNIYASESLFTAG
ILPDRPAQSLSEAEAELLANTIKAVLLRSIEQGGTTLRDFLQTDGKPGYFAQQLQVYGRA
GEPCRVCGTPIISGRHGQRSTFWCPHCQH
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacctgaggtagaaaccagccgacgcggtattgagccccacctggcaggt
gaaaccatcctgcacgctatcgtgcgtaacccgcgcctgcgctggccggtttcccatgaa
atccatacgctgagcgaccagccggtgctcagcgtgcagcgtcgcgccaaatacctgttg
ctggagctgccgcacggctggattatcattcacctcggcatgtccggcagcctgcgcgtg
ttgcccggcgagcagccagcggcgaagcatgaccatgtggatttagtgatgagcaacggc
aaagtgctgcgctataccgatccgcgtcgctttggcgcctggctgtgggcaccggatctg
gctggcagcagcgtgctggcgcatctggggccggaaccgctcagcgatacgttcagcggg
gcgtggctgtttgaaaaatctcgcggcaagcgcacggtgattaaacagtggctgatggat
aacaaggtggtggtcggcgttggcaatatctacgccagcgaatcgctttttaccgccggg
atcctgcccgatcgtccggcgcagagcctgagcgaagccgaagcggaactgctggcaaat
accatcaaagcggtgctgttgcgttcgattgagcagggcggcaccaccctgcgggatttc
ctgcaaaccgatggtaaaccgggctactttgctcagcagctgcaggtatacggccgggcg
ggtgaaccctgccgcgtctgcgggacgccgattatcagcggcagacacggccagcgcagc
accttctggtgcccgcactgtcagcactga
DBGET
integrated database retrieval system
