Pampinifervens diazotrophicum: IAE16_04605
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Entry
IAE16_04605 CDS
T11281
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
pdiz Pampinifervens diazotrophicum
Pathway
pdiz02024
Quorum sensing
pdiz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdiz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IAE16_04605 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
IAE16_04605 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdiz03019
]
IAE16_04605 (hfq)
03036 Chromosome and associated proteins [BR:
pdiz03036
]
IAE16_04605 (hfq)
Messenger RNA biogenesis [BR:
pdiz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
IAE16_04605 (hfq)
Chromosome and associated proteins [BR:
pdiz03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
IAE16_04605 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
DUF5608
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
WPM32963
LinkDB
All DBs
Position
792541..792750
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AA seq
69 aa
AA seq
DB search
MFMEKNTNVQDEYIEDLKKKGATVTVFLTRGNRITGKVLDHDKYTLLLEVEGEPNLIYKH
AISTIVQGG
NT seq
210 nt
NT seq
+upstream
nt +downstream
nt
atgtttatggaaaagaacaccaatgtgcaagacgaatacatagaagaccttaagaagaaa
ggggctactgtgacagtgttcctcacaagaggaaataggataacgggcaaggtacttgac
cacgacaagtatactctcttgcttgaggtagaaggtgagcctaaccttatatataagcat
gcaataagcaccatagttcaagggggttaa
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