Pampinifervens diazotrophicum: IAE16_07990
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Entry
IAE16_07990 CDS
T11281
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
pdiz Pampinifervens diazotrophicum
Pathway
pdiz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdiz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IAE16_07990 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdiz03019
]
IAE16_07990 (rny)
Messenger RNA biogenesis [BR:
pdiz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IAE16_07990 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
WPM31756
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All DBs
Position
complement(1372353..1374089)
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AA seq
578 aa
AA seq
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MSVEVLVITVFLALAVGGALGFILSRKGSSKPPVFETAVDIEEKKKEAELIVSKAKEEAQ
EIIRKAQEEAREVRLNSEREAEKIVRLAQEEADRLRLTLKEETEKIRQDLDKKSKEMEEY
LAERKQEIQKLEQALQHREANLERRVQALERREEELYRREKEVREMEKQVDQAQRDLQLK
IREIDERKKEIEALRHREILELQRIASMSLEEARAELLRRVEEEAKIEAIRVAKRIEEEA
RERAEFEAKKIITTAVQRLSSEIAINYTTTTVELPSNEFKGRIIGREGRNIRTFELLTGV
DLIIDDTPDIVTISSFDPMRRELAKDALERLIEDGRIHPARIEEVVAEVKKEMDEKIRKM
GEETCMELGLYDINPGLYYYIGKLYYRTSYSQNVLLHSKEVAYLAGMMAEELGLDAKMAR
RAGLLHDIGKAISHELGGSHTDIGIELCKRYGEPDPVLNAIKAHHNEEPVRYPEVALVCA
ADALSAARPGARRESLEAYLKRLEKLEEIVKSFKGVQNAYAVQAGREVRVIVSPEEISDE
EAYMLSKNIARKIEEEMQFPGQIKVVVIRETRHVEYAK
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaagtgcttgttattactgtctttttggctttagctgttggaggagctttg
ggttttatactttcaagaaagggttcaagcaagccacctgtttttgagacagcggtagat
attgaagagaagaagaaagaagcagagctaatagtttcaaaggcaaaggaggaagcccag
gagataataagaaaggctcaggaggaagcaagggaggtcaggctaaattcagaaagggag
gctgagaaaatagtcagacttgcccaagaggaagcggacagactaaggttaacgctcaag
gaagagacggagaagataagacaagaccttgacaaaaaaagcaaggagatggaagaatac
ctcgcggaaagaaagcaggaaatccagaaattagagcaagctctacaacaccgcgaggca
aacttagagagaagggttcaagctcttgaaaggcgagaggaagagctatacaggagagaa
aaggaagtaagggagatggaaaagcaagtagaccaagcccagagggacttacagctcaaa
attagggagattgacgagagaaaaaaggagatagaagctctcagacatagggagattctt
gaactccagagaatagccagtatgtcccttgaggaggcaagagcggagctcctcaggaga
gtggaagaggaggcaaagatagaagccataagagtggcaaagcgtatagaggaggaggca
agggaaagggcagagtttgaagcaaagaagataataaccacagcagtccagaggctctct
tctgagatagccataaactacaccaccaccacagtggaacttcccagcaacgaatttaaa
ggaagaataataggaagagaggggagaaacataagaacctttgagcttctcacaggcgta
gaccttataattgacgatacgcctgatattgtaaccatatcttcctttgaccccatgagg
agagagctcgcaaaggatgccttggaaaggcttatagaagatgggagaatacaccccgcc
aggatagaggaggtggtagcagaggtcaaaaaggaaatggatgagaagataaggaagatg
ggagaagagacatgcatggagcttggtctatacgacataaaccctgggctttattactac
ataggtaagctctactacaggacaagctattctcagaacgtgcttttacactcaaaggaa
gttgcctaccttgcaggtatgatggcggaggagctcgggctggatgctaaaatggcaagg
agggctggacttttgcacgatataggtaaagccatatcccacgaactgggaggttctcac
acggacataggcatagagctctgcaaacgctatggagagccagacccagtcctaaacgcc
ataaaggcacaccacaacgaagagccggtaagatatccagaggttgcccttgtgtgtgct
gcggatgccctctccgcagcaagacctggtgcaagaagagagagccttgaagcctatctc
aagagacttgaaaagttagaggaaatagtcaagtcctttaagggtgtgcaaaacgcctat
gcggtgcaggcaggaagagaggtaagagttatagtgagcccagaggagataagcgacgag
gaagcctacatgctttccaaaaacatagcaaggaaaatagaagaagagatgcagtttccc
ggacagataaaggtggtggtaataagggagacaagacatgtggaatacgccaagtaa
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