Pampinifervens diazotrophicum: IAE16_08535
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Entry
IAE16_08535 CDS
T11281
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pdiz Pampinifervens diazotrophicum
Pathway
pdiz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdiz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IAE16_08535 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdiz03021
]
IAE16_08535 (rho)
03019 Messenger RNA biogenesis [BR:
pdiz03019
]
IAE16_08535 (rho)
Transcription machinery [BR:
pdiz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
IAE16_08535 (rho)
Messenger RNA biogenesis [BR:
pdiz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IAE16_08535 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
AAA_25
ATPase_2
LysM2_NFP
S1CSD-TOTE-2
DUF7440
K-box
Motif
Other DBs
NCBI-ProteinID:
WPM31857
LinkDB
All DBs
Position
1474014..1475300
Genome browser
AA seq
428 aa
AA seq
DB search
MEQVQEKKVYTLEELKKLSLQELQKIGRELELSRVTGLRKEELIEKILTVQAKEEGLNFV
KGVLEILPESYGFIRSSENNYMPNYTDVYVAPSQIKRFGLRTGDTIVGFARPPQEKEKYQ
ALIKIESVNGLPPDPDILKARPNFEKLTPYHPTERFNLETSPTELSTRVISLIAPIGKGQ
RGMIVAPPKAGKTVLLQKIAKALIQNHPEVHLIILLIDERPEEVTEMRRIVGEGAEVVAS
TFDEPPERHMQVAELVVEKAKRLVELKQDVVILLDSMTRFGRAANAVTPPTGRVLTGGIE
ATALQRPKKFFGAARNIEEGGSLTIIATALIETGSKMDDVIYEEFKGTGNMEIHLDRRLM
ERRIFPAINIEKSGTRKEELLLEDWELQRIWVLRKFLATMDAIEAMEFLLDKLKKFKTNK
DFLKAMHS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggaacaagttcaagagaaaaaggtttatacacttgaagagcttaagaagctatctctg
caggagctacaaaaaataggcagagagcttgagctttcaagggtaacggggttgaggaag
gaggagcttatagagaaaatactcactgtgcaggcaaaagaggagggattaaactttgta
aagggtgtattagagatcctgcctgagagctatggctttataagaagctccgagaacaat
tacatgcccaactacactgatgtctatgtggcaccctcccagataaaaaggtttggactg
agaactggtgataccatagtaggctttgcaagaccgccacaggagaaggaaaaataccaa
gctcttataaagattgaatccgttaatggattaccaccagacccagatattcttaaggca
agacccaactttgaaaaactcactccctaccacccaacagaaaggtttaacttagaaaca
tcccccacagaactatctacaagggttataagcctcatagcacccataggaaaggggcag
agaggtatgatagtggcaccaccaaaggcaggaaagacagtgcttctacagaaaatagca
aaagcccttatacagaatcatcctgaggtgcatctgataatcctgcttatagacgaaaga
ccagaagaggtcacagaaatgaggaggatagtgggagagggtgcggaggtggttgcctct
acctttgatgagccaccagaaagacacatgcaagtggcggagctggttgtggaaaaggca
aagaggctcgtggagctaaagcaggatgtggtaatactcttggactctatgacccgtttt
ggaagggcagccaatgcagttacacctcccacgggtagagttttgactggtggtatagaa
gctaccgcacttcaaagacctaaaaagttctttggtgctgcacggaacatagaagagggt
ggctctctaacaataatagcaaccgctctcatagaaactggttcaaagatggacgatgtt
atatacgaagagtttaaaggcacaggaaatatggaaatacacttagacagaaggctaatg
gaaaggaggatattcccagccataaacatagaaaagtctggcacgagaaaggaggagctt
ttacttgaggattgggagcttcagaggatatgggtcttaaggaaattcttagccactatg
gacgccatagaggctatggagtttcttcttgataaactcaagaagttcaaaaccaacaaa
gatttcttaaaggctatgcactcgtga
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