Pseudoalteromonas donghaensis: D0907_01960
Help
Entry
D0907_01960 CDS
T05890
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pdj
Pseudoalteromonas donghaensis
Pathway
pdj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pdj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D0907_01960 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdj03021
]
D0907_01960 (rpoC)
03400 DNA repair and recombination proteins [BR:
pdj03400
]
D0907_01960 (rpoC)
Enzymes [BR:
pdj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D0907_01960 (rpoC)
Transcription machinery [BR:
pdj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D0907_01960 (rpoC)
DNA repair and recombination proteins [BR:
pdj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D0907_01960 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AXV64123
LinkDB
All DBs
Position
418650..422822
Genome browser
AA seq
1390 aa
AA seq
DB search
MKDLLKFLKQQNKTEEFDAIRIGLASPDMVRSWSYGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVTEPGMTTLERGQLLGEEEYLDALEEHGDEFEAKM
GAEAVLDLLRELDLGQLIAEMREELPTINSETKRKKITKRLKLMESFHQSGNNPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LKLHQCGLPKKMALELFKPFIYGKLERRGMATTIKAAKKMVEREVAEVWDVLDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIHLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDRINAKGEGAVFKDPKEAEKAYRSG
NAELHARVKVRISETIKNEEGEAVDYVTIVETTVGRAILSLILPKGMPFELINQALGKKQ
ISGLLNECYRRLGLKDTVIFADQVMYTGFHYAMKSGVSIGIDDLVIPPVKAEIIESAEAE
VTEINQQFQSGLVTAGEKYNKVIDIWSRVNENLSREMMANLSKDTVINAKGEEEEQSSFN
SVFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVINEDDCGTEDGLTMKPLIEGGDVVEALRERVL
GRVVAEDVVIPGTNEVLVERNIMLDEKLCDLLEEHSVDEVRVRSVITCDNDFGVCAKCYG
RDLARGHIINPGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKTNGTLKL
HNAKYVLNTDGKIVITSRSTEITIIDSFGREKERYKVPYGAVLTVQDNSEVQGNDIVATW
DPHSHPIVLEHKSKISFSDIDDSNTEAQTDELTGLTRVVVKDLGKVNAKEPKLIIESDER
GLQETRLPSFTTIEVTDGATANPGDVLARIPQEGSKTRDITGGLPRVADLFEARKPKDPA
ILAEITGTISFGKETKGKKRLVITPAEGDAYEEMIPKWRQLNVFEGEQVSKGEVIADGPE
SPHDILRLRGVTHVANYIVNEVQEVYRLQGVKINDKHIETIIRQMLRKCIILDGGDTEFL
AGEQVEVARVNIANRDLEKQGKIPAKFEIQLMGITKASLATESFISAASFQETTRVLTEA
AVNGKSDELRGLKENVIVGRLIPAGTGFAYHQDRLNRRKQGEIIEEQTVSAEEATQALTD
ALNADISGNQ
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctgaagcaacaaaataagaccgaagaattcgatgcaatt
cgcattggtcttgcttcgccagatatggttcgttcatggtcatacggtgaagtaaagaaa
cctgagacaatcaactaccgtactttcaagcctgagcgcgacggcttattctgtgcccgt
atcttcggcccagtgaaagattatgagtgtttatgtggtaaatataagcgccttaagcac
cgtggtgttatttgtgaaaagtgtggcgttgaagtaacgctgactaaagtgcgtcgtgac
cgtatgggtcatattgagcttgctagcccagttgcgcatatttggttcttaaaatcatta
ccgtcacgtatcggcttaatgctagacatgacacttcgtgacatcgagcgcgtactttac
ttcgaatcattcgtggtaactgagccgggtatgacaacgcttgagcgtggtcagctttta
ggtgaagaagagtacctagatgcgctagaagagcacggcgatgagtttgaagcgaagatg
ggtgcagaagcagtattagacttgcttcgtgaacttgatcttggccaattaattgctgaa
atgcgtgaagagttaccaacaattaactctgaaacgaagcgtaagaagatcactaaacgt
cttaaattaatggaatcgttccaccaatcaggtaacaaccctgagtggatgatcatgaca
gtacttccagtattgccacctgatctacgtccattagtaccactagacggtggtcgtttt
gcgacatctgatctaaatgacctttaccgtcgtgttattaaccgtaataaccgtcttaag
cgtctattagatttagcggcaccagatattatcgtacgcaacgaaaaacgtatgttacaa
gaagcggttgatgcgctacttgataacggtcgtcgcggtcgtgcgattacaggttctaac
aaacgtcctcttaaatcgcttgctgatatgatcaaaggtaagcaaggtcgtttccgtcag
aacttacttggtaaacgtgtagattactctggtcgttctgtaatcacagtaggtcctacg
cttaaactacaccagtgtggtcttcctaagaagatggcacttgagctgtttaaaccattt
atctacggcaaacttgagcgtcgcggcatggctacgactatcaaagcagcgaagaagatg
gttgagcgtgaagtggcagaagtatgggatgtattagacgaagtaattcgtgaacatcca
gtgttacttaaccgtgcaccaacacttcaccgtttgggtatccaagcgttcgaacctgtg
ctaattgaaggtaaagcgattcatttacacccattagtatgtgcggcgtacaacgctgac
ttcgatggtgaccaaatggcggtacacgtaccgttaacgcttgaagcacagttagaagca
cgtgctctaatgatgtctacaaacaacattctgtctccagcgaatggtgagccaatcatc
gttccttcacaggacgttgtattaggtctttactacatgacgcgtgatcgcattaatgcg
aaaggcgaaggtgcagtatttaaagatcctaaagaagctgaaaaagcataccgcagcggc
aacgctgagctacatgcgcgcgtaaaagtacgtatcagtgagacaattaagaatgaagaa
ggtgaagcagttgattacgttactattgttgaaacaacagtaggtcgtgcgattctttca
cttatcctacctaaaggcatgccgtttgagctaatcaaccaagccctaggtaagaaacag
atttctggcttattaaacgagtgttaccgtcgtctaggtcttaaagatactgttatcttt
gctgaccaagtaatgtacaccggtttccactacgcaatgaagtcaggtgtttcaatcggt
attgatgacttagttatcccaccggttaaagcagaaatcattgaatcagcggaagctgaa
gtaactgaaatcaaccaacaattccaatcaggtcttgtaacggctggtgaaaagtacaat
aaagttatcgatatctggtcacgtgtaaatgaaaacttatcacgtgagatgatggctaac
ttatcaaaagacacggtaatcaacgcgaaaggcgaagaagaagagcaatcttcattcaac
tcagtgtttatgatggccgactcaggtgcacgtggtagcgccgctcagatccgtcagtta
gcgggtatgcgtggtctaatggcacgtccagatggttcaatcatcgagacaccaatcacg
gcgaacttccgtgaaggtctaaacgtactacagtacttcatctcaacgcacggtgcgcgt
aaaggtcttgccgatacagcacttaaaacagcaaactcgggttacttaacgcgtcgtcta
gtagacgttgcacaagacttagtaatcaacgaagacgattgtggcacagaagatggctta
acaatgaaaccgcttattgaaggtggtgacgttgtagaagcacttcgcgaacgtgtactt
ggtcgtgttgttgctgaagatgttgttattcctggtactaacgaagtacttgttgagcgt
aacattatgcttgacgaaaaactgtgtgaccttttagaagagcactcagtggatgaagta
cgcgttcgttcagttatcacctgtgataatgactttggtgtatgtgctaagtgttacggt
cgtgaccttgcgcgtggccacatcatcaatccaggtgagtcagtaggtgttatcgcggca
caatcaatcggtgagccgggtacacagcttacaatgcgtaccttccacatcggtggtgcg
gcatctcgagcgtctgctgagaacagtgtacaagttaaaactaacggtacattgaagtta
cacaatgcgaagtacgtattaaacacagacggtaagattgttatcacgtctcgttcaaca
gagatcactatcatcgatagctttggtcgtgagaaagagcgttataaagtaccttacggt
gccgtgttaacagtacaagataattcggaagttcaaggtaacgatatcgttgcgacttgg
gatccgcatagtcacccaatcgttcttgagcataagtcaaaaatctcgttcagcgatatt
gatgactcaaataccgaagcacaaacagatgagttaactggtttaacacgtgtggttgtt
aaagacttaggtaaagtaaatgcgaaagaacctaaactaatcatcgaaagcgatgagcgt
ggtctgcaagaaacacgtcttccttcattcacaacgattgaagtaacagacggcgcgaca
gcaaacccaggtgacgtacttgcacgtattccgcaagaaggttcgaagactcgtgatatc
acgggtggtctacctcgcgtagctgacttattcgaagcacgtaaaccgaaagatcctgca
attcttgcagaaatcaccggtacaattagcttcggtaaagaaacgaaaggtaagaagcgt
cttgtaatcacgccagcagagggtgacgcatacgaagagatgattcctaaatggcgtcaa
cttaacgtgttcgaaggtgagcaagtgtctaaaggtgaggttatcgccgatggtccagaa
tcaccacatgacatcttacgcctacgtggtgtaactcatgttgcaaactatatcgttaac
gaagtgcaagaggtttaccgcttgcagggcgttaagatcaatgacaagcacattgagaca
attattcgtcaaatgctacgtaaatgtatcattcttgacggcggtgacactgagttctta
gccggtgaacaagttgaagtggcacgcgttaatatcgcgaaccgcgaccttgaaaagcaa
ggcaagatcccagctaaatttgaaatccagttaatgggtatcactaaagcgtcacttgca
acagaatctttcatttcagcagcctcgttccaggagacaacacgtgtccttacagaagcc
gctgtaaatggtaagagcgatgagcttcgtggtctgaaagagaacgtaatcgtgggtcgt
ctgatcccagccggtactggctttgcgtatcaccaagaccgtttgaaccgtcgtaagcaa
ggtgaaatcatcgaagagcagactgttagcgctgaagaggcaactcaagcattaactgac
gcacttaatgctgatatctctggaaaccaataa
DBGET
integrated database retrieval system
