Pseudoalteromonas lipolytica: D0907_02830
Help
Entry
D0907_02830 CDS
T05890
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pdj
Pseudoalteromonas lipolytica
Pathway
pdj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D0907_02830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdj03019
]
D0907_02830
03016 Transfer RNA biogenesis [BR:
pdj03016
]
D0907_02830
Enzymes [BR:
pdj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
D0907_02830
Messenger RNA biogenesis [BR:
pdj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D0907_02830
Transfer RNA biogenesis [BR:
pdj03016
]
Prokaryotic type
tRNA degradation factors
D0907_02830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
Rrp44_S1
OB_RNR_1st
Motif
Other DBs
NCBI-ProteinID:
AXV64283
UniProt:
A0AAD0WBB6
LinkDB
All DBs
Position
596162..598627
Genome browser
AA seq
821 aa
AA seq
DB search
MTKQDPNLSREQEKYENPVPSREFILTHLESRAKPANFTQLCDELHVDDTERQIAFKRRL
RAMERDGQLYFNKFKCYALIDESGLVKGKVVGHRDGFGFLEVEGENKDWFIAKHQMNMVL
HGDIVLAKGNRKGGSGKCEARIIKVLTNERAPIVGRYFVEHGIAVVVAEDPRITQDIMIL
PGSENGARHNQMVQVQITQNPSRHMNAVGKVTEVLGEHLAPGMEIEVALRNHDIPHVWPE
AVEKQVAHLGEFVDEQAKQGRVDLRDLPLVTIDGEDARDFDDAVYCERKPSGGWCLWVAI
ADVSHYVGMNTPLNKEAIERGNSVYFPEQVIPMLPKVLSNGLCSLNPNVDRLCMVAEMTV
SEQGTLENYKFYEAVMNSHARFTYTKVHAILQGDERLCEEYAPMVPHLTDLHQMYMALKA
ARQERGAIEFETLETRFVFDAHRKIESIVPVVRNDAHKLIEECMILANVSAARLLEKHEA
SALYRVHDEPDAEKLGFFRNFLSELGIESTLSDEPTPKEITHVLAKLGDRPEAELIQTML
LRSMKQAVYQPDNIGHFGLALPAYAHFTSPIRRYPDLVVHRAIKAVLKAQGQQTSGEYAY
SNDEVDILGEQCSTTERRADDATREVADWLKCEFMQDHVGDEFGGVISSVTNFGLFVRID
DLQIDGMIHVTNLGNEYFHYDNAKHCLIGEQTHTVHRLGDKVTVQVSSVSLDERRINLVF
AGNVPQDRYARRRAQSAPAKPSIRAQLKAGKIPGKKGDDSRSDPKSSEKDNAKRGKSSHA
KGRKKPNSKQADVVKAGKKKSKKKATKKAKRPGKNARKRTS
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaacaggatcccaatctcagtcgagaacaagaaaagtacgaaaacccagtccct
agccgtgagtttatacttactcacttagaatctcgcgctaaaccagcaaacttcacacaa
ctttgtgacgaattacacgtggatgacactgaacgccaaattgcgtttaaacgtcgtttg
cgcgctatggagcgtgacggtcagttgtatttcaataaatttaaatgctacgcgttgatt
gatgaatcaggccttgtgaaaggcaaagtagttggccatcgtgatgggttcggcttttta
gaagttgaaggcgaaaataaagattggtttatcgcaaaacaccagatgaacatggtgctg
catggcgacattgtgcttgctaaaggcaatcgcaaaggcggcagtggtaaatgcgaagcg
cgtatcattaaagtgttaacgaatgagcgcgccccgattgttggtcgttattttgttgag
catggcattgcggtggttgttgccgaagacccgcgaatcacgcaagatattatgatactg
cctggcagtgagaatggcgcgcgccataatcaaatggttcaagttcagatcacgcaaaac
ccaagtcgtcacatgaatgcagtgggtaaagtaacggaagtattgggtgagcatttagcc
cccggtatggaaattgaagtagcacttcgaaaccatgatattccgcatgtatggcctgaa
gccgttgaaaagcaagttgcccatttaggtgaatttgttgatgagcaagcaaagcaaggc
cgagtcgatttacgtgatttaccattagtaacaattgatggtgaagatgcacgagacttt
gatgacgccgtttactgtgagcgaaaaccatcaggtggttggtgtttatgggtcgcgatt
gctgatgtatcacattatgttggtatgaacacgccactgaataaagaagcgatagaacgc
ggtaattcagtgtactttcctgagcaagtgattcccatgttgccgaaggtgttgtcaaat
ggtttgtgttcattaaaccccaatgttgatcgcttatgtatggttgccgagatgaccgta
tctgagcagggcaccttagagaattataagttttacgaagcggtgatgaattcacatgcc
cgttttacttacactaaagtgcatgcaattttgcaaggtgatgaaaggctgtgcgaagaa
tacgcgccaatggtgccgcatttaactgatttacatcaaatgtacatggcactgaaagca
gctcgtcaagagcgtggtgcaattgagtttgaaacgctagaaacgcgttttgtgtttgat
gctcaccgaaaaattgaatcaatcgttcctgtggtgcgtaatgatgcgcataagctcatt
gaagaatgcatgattttggcgaatgtatcggcagctcgtttattagaaaaacatgaggcc
agtgcactttatcgtgtgcatgatgaacctgatgctgaaaagcttggttttttcagaaac
tttttatctgaactgggcattgagtcaacattgtcagatgagccgacaccaaaagaaata
acacatgtacttgcaaaactaggtgaccgtcctgaagccgagttaattcaaaccatgtta
ttacgttcgatgaaacaggctgtgtatcaaccagacaacattgggcactttggtttggcg
ttacctgcttacgcgcattttacatcgccaattcgccgttaccctgatttagttgtgcac
cgtgcgattaaagctgttttaaaagcacaaggccaacaaacgtcgggcgagtatgcttac
agtaatgatgaagttgatattttaggcgagcaatgttcaaccactgaacgtcgcgcagat
gatgcgacccgtgaagtcgccgattggcttaaatgtgagtttatgcaagaccatgttggc
gatgaatttggcggggttatttcatcggtcactaactttggtttatttgttcgcatagac
gacttacaaatagatggcatgatccacgtaacgaatcttggcaatgaatacttccattat
gacaatgcaaaacactgtcttattggtgagcaaactcatacggttcatcgcttaggcgat
aaagtgacggttcaggtatcgtctgtcagcttagatgagcgtcgaattaatttagtgttt
gctggtaatgtaccgcaagaccgctatgcgcgacgccgtgcgcaaagtgcacctgcaaaa
ccgagtattcgtgcgcagttaaaagcagggaaaatccctggcaaaaaaggggatgatagt
cgctcagaccctaaatcttcagagaaagataatgcaaagcgtggcaagtcttctcatgca
aaagggcgtaaaaaacctaacagcaaacaagcggatgttgtaaaagcaggtaagaagaag
agcaagaaaaaagccaccaaaaaggcaaaaagaccgggcaagaacgcccgaaaacgtact
agctga
DBGET
integrated database retrieval system
