Pseudoalteromonas lipolytica: D0907_02850
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Entry
D0907_02850 CDS
T05890
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pdj
Pseudoalteromonas lipolytica
Pathway
pdj03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pdj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
D0907_02850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdj03400
]
D0907_02850
Enzymes [BR:
pdj01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
D0907_02850
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
D0907_02850
DNA repair and recombination proteins [BR:
pdj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
D0907_02850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AXV64287
UniProt:
A0AAD0RXN6
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All DBs
Position
601044..601853
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AA seq
269 aa
AA seq
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MPELPEVEVSRLGITPHVLDHVVTKVNIHNASMRWPVPDDVYQLQGLKVTSIERRAKYLL
LGCERGSVILHLGMSGNLRVVNADEPLKKHDHIEFVLESGKALRLNDARRFGACLWQAPG
ECHTLLTKLGPEPLTDDFFAERVYEQSRNKKVPVKQFIMDNAVVVGVGNIYANESLFKAG
IHPKREAGKVSLKRYQQLVPIIKDTLAAAISQGGTTLKDFAQSDGKPGYFAQQLLVYGRK
GEPCVTCKEPLKEIRLGQRSTVFCANCQK
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattaccagaagttgaagtaagtcggttggggattactccgcatgtgctcgac
cacgtagtgactaaagtgaatattcataatgccagcatgcgctggccagtgcctgatgat
gtatatcagttacaaggtcttaaagttacctcgattgaacgtagagcaaagtatttatta
ctgggttgtgagcgtggaagtgtcatattacatttgggaatgtcaggcaatttacgcgtt
gtgaatgccgatgaaccacttaaaaaacatgaccatatcgagtttgttttagagtctgga
aaagcgcttaggctaaatgatgcgcgccgctttggggcatgtttatggcaagcacctggc
gaatgccatactttactgaccaagctaggcccagaacctcttactgatgatttttttgct
gagcgtgtttacgagcaatcaagaaacaagaaagtaccggttaagcaatttattatggat
aatgccgtggttgttggtgtggggaatatctacgccaatgagtcgctatttaaagcgggg
atccaccccaaacgtgaagcgggaaaggtatccttaaaacgttatcaacaattagtgcct
ataattaaagacacactagctgcggcgattagtcaaggcggcacgacgttaaaagatttt
gcgcaaagtgatggtaaaccgggttattttgctcagcaattattggtgtatggccgcaaa
ggtgagccgtgcgttacctgtaaagagccgttaaaagaaattagattaggccaaagaagt
accgtgttttgtgcaaattgccaaaaataa
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