Pseudoalteromonas lipolytica: D0907_04075
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Entry
D0907_04075 CDS
T05890
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pdj
Pseudoalteromonas lipolytica
Pathway
pdj03410
Base excision repair
pdj03430
Mismatch repair
pdj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pdj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
D0907_04075 (recJ)
03430 Mismatch repair
D0907_04075 (recJ)
03440 Homologous recombination
D0907_04075 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdj03400
]
D0907_04075 (recJ)
DNA repair and recombination proteins [BR:
pdj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
D0907_04075 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
D0907_04075 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D0907_04075 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AXV64521
UniProt:
A0AAD0WBZ8
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All DBs
Position
887375..889096
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AA seq
573 aa
AA seq
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MEKIIQVRPRVDDSYLPQHLHPVIKQVYASRQVKDANELDNSAATLHDFKLFKDIDKAVL
LLQQALADQQRVLIVGDFDADGATSTATLMQGLAMFGFNNLDYLVPDRFSLGYGLSPALA
AQIVEMKPELVITVDNGISCIDGITIVKRAGIKVLVTDHHLQGDTLPNADAIVNPNRHDC
QFPSKSIAGVGVAFYLLIALRSHLREQGAFEHSPMPNLAELLDIVALGTVADVVALDANN
RTLVHQGLARIRSGKTRPGISALIEVANRNAARLSASDFGFSLAPRLNAAGRLDDMSLGI
ACLLSNDINQARRIASELDSLNHERREIEQGMQVEAQAVLDRLAFKTDAIPDAICLYQAD
WHQGVIGILAGRLKEKYHRPTIIFAAGDNGEIKGSCRSIEGLHMRDLLERVNTLHPHLIS
KFGGHAMAAGLSINEQSFPEFKAVFERMVTDTLTDEHKQSILLTDGELPNECFSMEFANL
LKNAGPWGQQFPEPVFEHLFEIIQQRIVGEKHLKLVLKHQSGRLVDGIAFGVDVRAWPDT
EARYVKAAYQLDINEFRGKFSLQLIIRELQKAT
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaataatccaagttcgtccccgtgtcgatgactcataccttcctcaacactta
catcccgttattaagcaagtttatgcctcgcgccaggtaaaagatgccaatgaattagat
aacagtgcagcgaccctgcatgactttaaattatttaaagacatagacaaagccgtatta
ttactgcaacaggcactcgcagatcaacagcgagtattaattgtcggtgacttcgacgcc
gatggtgcaaccagtacggccactttaatgcaaggcttggccatgtttgggtttaacaac
cttgactatttagtgcctgataggtttagccttggttatggcttaagccccgcactggcg
gcgcaaattgttgaaatgaagcctgagctggttattacagtggataatggtatttcgtgc
attgatggcattacgattgtgaagcgcgccggtattaaggtactggttacagatcatcat
ttacaaggggatacgctgcctaatgcagatgctatcgtgaaccctaaccgccatgattgt
cagttcccatctaaatcgattgccggtgtaggcgtggcattttatttattaattgcgctg
cgcagccacttacgcgaacaaggggcctttgagcatagtccaatgccaaaccttgctgag
ttacttgatattgtcgcccttggtacggtggctgatgtcgttgcgcttgatgctaataat
cgtacgttggttcaccaaggattagcacgtattcgcagtggtaaaactcgtccgggaata
agcgctttaattgaagtggctaatcgaaatgcggcacgtttaagtgccagtgactttggc
ttttcattggctcctcgcttaaacgctgcagggcgtttagatgacatgagcttaggcatc
gcgtgcttgttatcaaacgacataaatcaagctcgccgtattgccagtgaactcgacagc
cttaatcatgagcgccgcgaaatagagcagggcatgcaggttgaggcgcaggccgtgctc
gatcgccttgcctttaaaaccgacgctatccccgatgcgatttgcttgtatcaagctgac
tggcatcaaggggtaattggtatattagcggggcgtttaaaagagaaatatcaccggcct
acgattatttttgccgcgggcgataacggtgaaataaaaggctcatgtcgttcaattgaa
ggtctgcatatgcgtgacttacttgaacgagtgaatactctacacccacacttaatcagt
aagtttggggggcatgcaatggcagccggcttgagcattaatgagcagagttttcccgag
tttaaagctgtgtttgagcgtatggtcaccgacacactgaccgatgagcataaacaaagt
attttgttgaccgacggcgagttgccaaatgagtgtttttcgatggagtttgccaacctg
ttaaaaaatgcagggccatggggacagcaatttcccgagccggtattcgagcacctattc
gagattattcaacaacgtattgtaggtgaaaagcacttaaaactcgtgttaaagcatcaa
tctggacgtttggttgatggtattgcatttggtgtcgatgtgcgtgcctggcccgatacc
gaagcacgctatgttaaagctgcctaccaactcgatataaatgaattccgtggcaaattc
tcgttacaactgattattcgagagctacaaaaagcgacataa
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