Pseudoalteromonas lipolytica: D0907_05225
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Entry
D0907_05225 CDS
T05890
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pdj
Pseudoalteromonas lipolytica
Pathway
pdj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D0907_05225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdj03019
]
D0907_05225
03009 Ribosome biogenesis [BR:
pdj03009
]
D0907_05225
Enzymes [BR:
pdj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D0907_05225
Messenger RNA biogenesis [BR:
pdj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D0907_05225
Ribosome biogenesis [BR:
pdj03009
]
Prokaryotic type
rRNA helicases
D0907_05225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
UvrD-helicase
CMS1
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AXV64730
UniProt:
A0AAD0RY26
LinkDB
All DBs
Position
complement(1150789..1152618)
Genome browser
AA seq
609 aa
AA seq
DB search
MSEPVTFESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFA
LPLLNNIDPSVKQPQILVLTPTRELAIQVAEAFEQYAKHTRGVEVLALYGGQSYSIQLSA
LRRGAQIIVATPGRLIDHINRGTIKFESLQALVLDEADEMLRMGFIDDVESIMEKTPREK
QTCLFSATMPKQIQNISSKYMNEPEQVHISARNSTVSTVEQVFWNAHVHKNKAIVRFLEA
EEYDGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVERLKSGLLDIVIAT
DVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRSGKAILFVKHNERYLLKNIIR
HTKSEIAQVDLPTAKVVEEKRIKALQDKLTIALENKDITFFNQVAANMAEKLELSFEDLA
GALLCLAQQQSPIKVEEVKVQPRGERTERGGDRRRNERADRGDRPARERKPREPRERNSR
SMGPMDTYRIEVGREHGVQVKNIVGAIANEADISSKFIGDIRLHDSHSTVQLPQNMPKDV
LDHFQKVFICKRPMGMTLTKAEAASERPERSERPAGERSDKKRSFKDKDRGEKRSGPRKE
RRPVSFTAN
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaccagtcacgtttgaatctttaaatctttctcctgcaattttaaaagcagtt
gaagagctaggttacaagactccatctgaaatccaagctcaatgtataccgttattgcta
gaaagaaaggacgtactgggactagcgcaaacgggtacaggtaaaacagcagcatttgca
ctgccattactaaataatattgacccgtctgtgaaacagccacagatccttgttctaacg
cctacgcgtgaacttgcgatccaagtagctgaggcattcgaacaatatgctaagcatact
cgtggtgtagaagttttagccctttatggtggccaaagctacagcatccaattaagtgca
cttcgtcgtggcgcgcaaatcattgttgcaacgccaggccgcttaatcgaccacattaac
cgtggcacaatcaaattcgagagcttacaagcccttgttcttgatgaagcggacgaaatg
ttacgcatgggtttcattgatgatgtagaaagcatcatggaaaaaacaccgcgtgaaaag
caaacatgtcttttctctgcaaccatgcctaagcaaatccaaaatatcagcagcaaatac
atgaacgagcctgagcaagttcatatttcagcgcgtaactcaacagtatcgactgttgaa
caagtattttggaatgcacacgtacacaaaaacaaagcgatcgtgcgcttcttagaagct
gaagaatacgatggtgcgattgttttcgtacgtacacgtaatgacacagtacaattagct
gaattacttgagcgcgaaggtttctctgccgcaccacttaatggtgacatgaaccaacaa
gcacgtgaacgcactgtagagcgtttgaaaagtggtttacttgatatcgtaattgcaacc
gacgttgcagcacgtggtctagatgttgaccgtttaagcttggtaattaactacgatatt
ccacaagactctgaagcctacgttcaccgtattggccgtacaggtcgtgcgggtcgttca
ggtaaagcgattcttttcgtaaaacacaacgagcgttatttacttaaaaatatcattcgt
catacgaagtctgaaattgcacaagtagatttaccaacagcgaaagttgttgaagaaaaa
cgcatcaaagcattgcaagacaagttgactattgcacttgaaaataaagacatcacgttc
tttaaccaagtagcggccaacatggctgaaaagcttgaactaagcttcgaagacttagca
ggtgccttactgtgtttagcgcagcaacaatcaccaatcaaggttgaagaagttaaagtt
caaccgcgtggcgaacgtacagaacgcggtggtgatcgccgtcgtaacgaacgtgctgac
cgtggtgatcgccctgctcgcgaacgtaaaccgcgtgagccgcgtgaacgtaacagccgc
agcatgggtcctatggatacataccgtatcgaagtaggtcgtgagcacggtgtacaagtt
aaaaatatcgttggtgcgattgctaacgaagcagatatctcaagcaagtttattggtgac
attcgtctgcacgacagtcacagtacggtacaattaccgcaaaacatgcctaaagatgtg
cttgatcacttccaaaaagtgtttatttgtaaacgcccaatgggaatgacactcaccaaa
gctgaagccgcttctgagcgcccagagcgcagcgaacgcccagcaggtgagcgcagtgat
aaaaagcgtagcttcaaagacaaagaccgtggtgaaaaacgtagcggccctcgtaaagag
cgtcgtccagtaagcttcacagcaaactaa
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