Pseudoalteromonas lipolytica: D0907_05295
Help
Entry
D0907_05295 CDS
T05890
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pdj
Pseudoalteromonas lipolytica
Pathway
pdj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D0907_05295 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdj03019
]
D0907_05295 (pnp)
03016 Transfer RNA biogenesis [BR:
pdj03016
]
D0907_05295 (pnp)
Enzymes [BR:
pdj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
D0907_05295 (pnp)
Messenger RNA biogenesis [BR:
pdj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
D0907_05295 (pnp)
Transfer RNA biogenesis [BR:
pdj03016
]
Prokaryotic type
tRNA degradation factors
D0907_05295 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
PNPase
RNase_PH_C
KH_1
S1_RRP5
OB_RRP5_4th
KH_2
S1_2
KH-I_KHDC4-BBP
aRib
KH_SLS1_2
KH_NusA_2nd
PQQ
Motif
Other DBs
NCBI-ProteinID:
AXV64742
UniProt:
A0AAD0RYN3
LinkDB
All DBs
Position
1164771..1166903
Genome browser
AA seq
710 aa
AA seq
DB search
MQAIIKEFQLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKRDAQPGQDFFPLTV
NYQERMYAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPNGFVNEVQVIATVVSVN
PEIQPDMVAMIGTSAALAISGIPFNGPIGASRVGFINGEYVLNPTLKELEESQLDLVVAG
TDNAVLMVESEANVLSEDVMLGAVVYGHEQSQAIINAINEFKAEAGKPTWDWTAPEKNVA
LEEKVAELAADKVGEAYRITDKVARKEALGAAKDAVIEALSAELAEDETLDTQEVSKVFG
SLEKKIVRGRITAGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGT
ERDSQLIDDLTGTHKNHFMLNYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIQAVMPTL
TEFPYSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEEENFVVL
SDILGDEDHLGDMDFKVAGTSDGITALQMDIKIEGITQEIMQIALKQAKAARLHILGVMD
EAISAPSEELSQFAPRIYTMQIPAKKIAEVIGKGGATIRQLTEETGTTIEIEDDGTIKIA
ATDGISANNAIKRIEQLTAELEVGTIYTGKVVRIVDFGAFVNILPGKDGLVHISQISTER
VNNVTDHLSEGQEVQVKVLEVDRQGRVRLSIKEAMAPAAEETAEAPKDAE
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagcaattattaaagaatttcaactaggtcaacacactgtgacactagaaacaggt
gctatcgctcgtcaagctgacggcgctgtacttgcaagcattggcgacacttcagtactt
gttactgttgttggtaagcgtgatgcacaaccaggtcaagactttttcccactaacagtt
aactaccaagagcgtatgtacgctgcgggtcgtatccctggtggtttccttaagcgtgaa
ggtcgtcctaacgatggcgaaacacttattgcacgtttaattgaccgtccaattcgtccc
cttttcccgaatggcttcgtaaatgaagtacaagttatcgcgacagttgtttctgtaaac
cctgaaatccaacctgatatggttgcaatgattggtacatcagcagcgcttgcaatttct
ggtattccatttaatggtcctatcggtgcatcacgtgttggtttcatcaacggcgaatac
gttctaaacccaacgttaaaagagcttgaagaaagccaacttgatttagtggttgcgggc
acagacaacgcggtattaatggttgagtctgaagcgaacgtgctatctgaagatgttatg
ttaggcgctgttgtatatggtcatgagcaatctcaagctatcatcaatgcaatcaatgag
ttcaaagcagaagcgggcaagcctacatgggattggactgcaccagaaaagaacgttgca
cttgaagagaaagtggctgaacttgctgctgataaagtgggtgaagcataccgcatcact
gacaaagtagcgcgtaaagaagcgttaggcgcagctaaagacgctgttattgaagcgctt
tctgctgagcttgctgaagacgaaacacttgatactcaagaagtaagtaaagtatttggt
tctttagagaagaaaattgttcgtggccgtatcactgccggtgaaaaacgtatcgatggt
cgtgaaccagatatgatccgtgcactagacgtaatgacgggtgtattaccgcgtactcac
ggttctgctatcttcacacgtggtgaaacacaagcacttgttactgcaacgcttggtaca
gaacgtgattcacagttaattgatgatttaacgggcacgcacaaaaaccactttatgctt
aactacaatttccctccgttctgcgtaggtgaaacaggttttgttggttcacctaagcgt
cgtgaaatcggccacggtaacctagctaagcgtggtatccaagctgtaatgccaacacta
actgagttcccttactcaatccgtgttgtatctgagatcaccgagtctaacggttcatct
tcaatggcgtctgtatgtggtacttctcttgcgttaatgaacgcgggtgtgcctattaaa
gcctctgttgcaggtattgcgatgggtcttgttaaagaagaagaaaactttgttgttctt
tctgacatcttaggtgatgaagatcacttaggtgacatggactttaaagttgcgggtact
tcagacggtatcactgcacttcaaatggatatcaaaatcgaaggtatcacacaagaaatc
atgcaaatcgcgcttaaacaagcaaaagctgcacgtttacacatcttaggtgtaatggac
gaagcgatttctgctccttctgaagagttatctcagttcgctccacgtatctacacgatg
caaattccggcgaagaaaattgctgaagtaattggtaaaggtggcgcaacgattcgtcaa
cttactgaagaaacaggcacaacgattgaaatcgaagacgatggtacaatcaaaattgca
gcaactgacggcattagcgcaaataatgcaatcaagcgcattgagcaattaacagcagaa
cttgaagtaggcacaatctacacaggtaaagttgttcgtatcgttgattttggtgcattc
gttaatatccttccgggtaaagatggcctagtgcatatttctcaaatcagcactgagcgc
gtaaacaacgttactgatcacttaagcgaaggccaagaagtacaagtaaaagtacttgag
gttgaccgccaaggtcgcgtacgtttaagtatcaaagaagcgatggcaccggctgctgaa
gaaacagcagaagcgcctaaagacgctgaataa
DBGET
integrated database retrieval system
