Pseudoalteromonas lipolytica: D0907_06360
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Entry
D0907_06360 CDS
T05890
Name
(GenBank) DEAD/DEAH box helicase
KO
K19789
DNA repair protein RadD
Organism
pdj
Pseudoalteromonas lipolytica
Brite
KEGG Orthology (KO) [BR:
pdj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdj03400
]
D0907_06360
DNA repair and recombination proteins [BR:
pdj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
D0907_06360
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Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
Helicase_C
DEAD
SWI2_SNF2
AAA_30
ERCC3_RAD25_C
AAA
AAA_22
AAA_16
T1R_D3-like
SLFN-g3_helicase
DZR
Zn_Ribbon_1
DUF7577
Motif
Other DBs
NCBI-ProteinID:
AXV64921
UniProt:
A0AAD0RYV4
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Position
1394561..1396309
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AA seq
582 aa
AA seq
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MKYVLRPYQQEAVQRTVSHFKQSDEAALIVLPTGAGKSLVIAELARIAKQKILVLAHVKE
LVEQNAQKYISFGFEASIFSAGLKQKSLKEQVTFASVQSLARNTAQLSDTYSLLIIDECH
RVSGDDQSQYGQVISSLKKQNPRLKVLGLTATPFRMGMGWVYHHHYHGFVRGDKDAPFKK
CIFELPLRYMIKHGYLTPPHEVDAAISHYDFSSLPCDSFGRYSAENMNALLKDNTRATKA
IIEQVIDYSEHRHGVMIFAATVMHAKEIVGYLPTDNTALITGDTDNNERDTIINQFKAKK
LKFLVNVSVLTTGFDAPHVDFIAILRPTESVSLYQQIVGRGLRLSEGKKECLVIDYAGNG
FDLFYPEVGSKKAQSDNEPVQVLCPGCGFANIFWGKTDAAGNVIEHFGRRCQGLLDDDDG
TQIQCDYRFRFKECEQCGEQNDIAARQCQACSAMMTDPDDKLREALNLKDALVLRCSGLS
AQLIANGLLKISYFDEDGASCDEVFNLSNDTGRFIFNKQFGRRAQGNSAPITWKTAEQVI
EQQHVLVAPDFVIARKNKKYGWKVAQKLFDYQGNYRKANQLK
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgaaatacgtacttagaccttatcagcaagaggccgtacagcgaacggttagccacttt
aagcaatcggacgaggcggcactgattgtattaccaacaggcgcgggcaaaagtttagtg
attgctgaattagcacgtattgctaaacagaaaattttagtcttagcgcatgttaaagag
ctcgtagagcaaaacgcacaaaagtacatcagctttggttttgaagcgagtatcttctct
gcagggcttaaacaaaaatcgcttaaagaacaggttacgtttgcaagtgtgcagtcacta
gcgcgcaatacggcgcaacttagtgatacgtattcattgctcattattgatgagtgtcat
cgcgtcagtggggatgatcaaagtcagtatggtcaagtgatatccagccttaaaaaacag
aacccccggctaaaagtattggggttaaccgcgactccttttcgtatgggaatggggtgg
gtttatcatcatcattatcatggctttgtaaggggagataaagacgcaccctttaaaaag
tgtatttttgagttaccgcttcgttacatgattaaacatggctatttaacgccgcctcat
gaagtagacgcagccataagtcattatgatttttcatctttaccctgcgattcatttgga
cgctatagtgctgaaaatatgaatgcgctcctcaaagataatacccgcgcaacgaaggcg
attattgagcaggttattgactacagtgagcatcggcacggcgtcatgatttttgcggca
acagtcatgcatgccaaagaaatcgtcggctacttgccaactgacaataccgcattaatt
actggtgatacagataacaacgagcgcgacactatcatcaatcaatttaaagcgaaaaag
ttgaaatttttggtcaatgtgtctgtactcaccaccggatttgatgcgccgcatgtcgat
tttattgccattttgcgtccaaccgagtcagtcagtttatatcagcaaattgttggcagg
gggcttagattaagtgaagggaaaaaagagtgcttagtgattgattacgcaggcaatggc
tttgacttattttacccagaggtgggcagtaaaaaagcccaaagtgacaacgaacctgtg
caagtactgtgtcctggttgtggctttgcgaatattttttggggaaaaacagatgccgca
ggcaatgtcattgagcactttgggcgtcgctgccaaggtcttctagacgatgatgatggc
acgcaaatacagtgcgactaccgttttaggtttaaagaatgtgagcagtgcggtgagcaa
aatgatatagcagcgaggcaatgccaagcttgctcagccatgatgacagaccccgatgat
aagttgcgtgaagcccttaatttaaaagatgcgttggtgcttcgctgtagtggtttatcg
gcacaacttatcgcaaatgggctgttgaaaattagctattttgatgaggatggtgccagt
tgcgacgaagtttttaatcttagcaacgacacaggccgttttatctttaacaagcaattt
ggtcggcgagctcaagggaatagtgccccgattacctggaaaacagcagaacaggttatt
gaacaacaacatgtattggtcgcgccagattttgttattgcccgaaagaacaaaaagtat
ggttggaaagttgcccagaaactatttgattatcagggtaattatagaaaagccaatcaa
ttaaagtaa
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