Pseudoalteromonas lipolytica: D0907_06385
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Entry
D0907_06385 CDS
T05890
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pdj
Pseudoalteromonas lipolytica
Brite
KEGG Orthology (KO) [BR:
pdj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdj03019
]
D0907_06385 (hrpA)
Enzymes [BR:
pdj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
D0907_06385 (hrpA)
Messenger RNA biogenesis [BR:
pdj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
D0907_06385 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
nSTAND3
AAA_22
ResIII
AAA_11
NACHT
SLFN-g3_helicase
T2SSE
ABC_tran
PhoH
TsaE
Motif
Other DBs
NCBI-ProteinID:
AXV64925
UniProt:
A0AAD0RYJ3
LinkDB
All DBs
Position
1403722..1407612
Genome browser
AA seq
1296 aa
AA seq
DB search
MVNLGPLFGELKTCLRKDQFILKKRLHGIKKINDETKQANIAQKIADDIARSQQLRVQRI
AALPTVTYPEQLPVSQKKEDIKQAIANNQVVIIAGETGSGKTTQIPKMCLELGRGVEGYI
GHTQPRRLAARSVANRIAEEMQCELGQQVGFKIRFSDQVSDNSYIKLMTDGILLAEIQQD
RFLNQYDTIIIDEAHERSLNIDFILGYLKNLLPKRPDLKVIITSATIDPERFSQHFDDAP
IIEVSGRTFPVEVRYRPTTEINKEEMEADGDQLQGIFDAVDELCDEGPGDILIFMNGERE
IRDTADALSKRNLKGTDILPLYSRLSNAEQNRIFAPHSRRHIILATNVAETSLTVPGIRY
VIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRIEAGICIRLYSEDDFNSRPE
FTDPEILRTNLASVILQMLGLGLGDMQQFPFVQAPDSRNINDGLTLLEELEAVKPAKRHK
QTELTKSGRSLSRLPVDPRLAKMVLTADSLGALREVIIIVAALSIQDPRERPQEKRGAAD
EKHGRFDDPDSDFIAFLNLWNYLEEQQSELSNSQFRKLCQKDFLAYMRIREWQDIVYQLS
TVCNEMGMKATTNVADSDRIHQSLLSGMLSHIGFKDEKQIYKGARNSQFHIFPGSGLFKK
SPKWIMAAELVETSKLYARINARIDLKWVEGFAQHLVKRSYSEPHWEKKPGAVIAFEQQT
LYGLLIVNKRRCVYSKIDPKVSRELFIRGALVEQELGQNEGFLQYNQELIDDIQVLENKS
RRRDILVDEQTLYEFYDKKIPADINNRAAFNAWWKQQKQKDKRFLHMSREALMQHGADHV
TEFDYPDTWQQENLLLPLTYHFDPGQAVDGVAVQIPVALLNQVQETGFDWHIPAFRHELI
CALIKSLPKTLRRNFVPAPNYADAVLAAIEPMQGNLIDAISTRLLRMTGVRVEPDAWDYS
TLAPHLRLQFEVRDEHDKLLARGLNLAKLKAQLQGKVTDTLSKVADKGIEKADLTQWSFG
ELPASYVKKQGQYEIKAFPALVDKKDSAAVELFDNEQKAQQAHQQGLRRLVLLNVPSPIK
YLQQNLPNKSKLGLYFNPFGKVNDLIDDCIAAGVDSLLIKYGNIRTQQAFEQAKEQIRGE
LGDTVVDIATQVEQVLSIAHSLNKRMKGRVDLTMITAHGDIKSQLQSLVFKGFVSQHGAA
KMADLIRYLKAIERRLEKLPVDPNRDRLCVLELEKVAEQYQKLANKIPKGMPVPDEIRSI
FWMQQELRVSLFAQTLGTPYPVSAKRVLNAIKECEL
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
gtggttaacctaggtccgctgttcggcgaattaaaaacatgcttacgcaaagatcaattc
atcctcaaaaaacgcctgcatggcatcaaaaaaataaacgatgaaacaaagcaagcgaac
atagcgcaaaaaatcgcggatgatattgctcgctcacagcaattgcgtgttcaacgtata
gcggcattaccaacagtaacctatccagagcaacttcctgttagccaaaagaaagaggat
attaagcaggcgattgccaacaaccaagtggtgatcattgcaggtgaaactggctcgggt
aaaacaacacaaattccaaaaatgtgcttagagcttggtcgtggggtagagggctacata
gggcatactcaaccaaggcgtttggcagctcgcagcgttgctaaccgtattgctgaagag
atgcaatgtgagcttggtcagcaagtcggttttaaaattcgttttagtgatcaggtctca
gataacagttatataaaattgatgaccgatggtattttgctggctgaaattcagcaagac
cgctttttaaatcaatatgatacgattattatcgatgaagcccatgagcgtagcctaaat
atcgattttattttgggctatttaaagaatttattgccaaaacgccccgatctaaaagtc
attattacctcagcaaccatcgatccagagcgattttctcagcattttgatgacgccccg
attattgaagtgtcaggacgcactttccctgtagaagtacgttatcgcccaactacagag
attaataaagaagagatggaagccgatggtgaccaactgcaaggtatttttgatgccgtt
gacgagctgtgtgacgaaggacccggtgacattcttatctttatgaatggtgagcgtgaa
atacgcgacactgccgatgcgctttctaaacgcaacttaaaaggcacagatatcctgcca
ctctattcgcgtttatcgaatgcagaacaaaatcgtatttttgcaccgcattcacgtcgc
cacatcattttagccacaaatgtggcagaaacctcgttaaccgtacccggcattcggtat
gttattgacccaggcaccgcgcgaattagccgttatagctaccgtacaaaagtacaacgc
ttaccaatagagccaatttcacaagccagtgccaatcagcgtaaaggccgttgtggtcgt
atcgaagcgggtatttgtattcgtttatacagcgaagatgattttaattcgcgtccagaa
tttactgaccctgaaattctacgtactaacttagcgtcggttattttgcaaatgctaggc
cttgggctgggcgatatgcaacaatttccgtttgtacaagcgccagacagtcgtaacatc
aatgatggtttaacgttactcgaagagcttgaggcggttaaacctgctaagcgccataag
caaactgagctgactaaatcaggacgtagtttaagtcgtttacccgtcgacccgcgttta
gccaaaatggtgctaaccgcagacagccttggggcattgcgtgaagtcattattattgtt
gctgcgctttcgattcaagacccccgtgagcgaccccaagaaaagcggggggcagctgat
gaaaaacatggccgatttgatgatccagattcagactttatcgcatttttaaatctgtgg
aattatcttgaagagcaacaaagtgagttaagcaatagccagtttagaaaactgtgtcaa
aaagactttttagcttatatgcgtattcgagaatggcaagatatcgtttatcaactgtcg
accgtgtgtaatgaaatgggcatgaaagcaacaactaacgtagccgacagcgaccgaatt
catcagtcactcttaagcggtatgttgagccacattggttttaaagacgaaaaacaaatt
tacaaaggcgcacgtaatagtcagttccatatttttccgggctcaggattatttaaaaag
agccctaagtggattatggctgcggagctggtggagacaagtaaactctacgctcgtata
aatgcccgtatcgaccttaaatgggttgaaggttttgctcaacatttagtgaagcgcagc
tacagcgagcctcattgggagaaaaaaccgggtgctgttatcgccttcgagcagcaaact
ttatacggcctgcttattgttaataagcgtcgttgtgtatacagcaaaattgatcctaaa
gtgagccgagagttgtttattcgtggcgctttggttgaacaagagcttggtcagaatgaa
ggctttttacagtataaccaagagcttattgatgatattcaagtgcttgagaataagtct
cgtcgtcgcgatatcttagtggatgagcaaacactgtatgagttttacgacaaaaaaatt
cctgctgatatcaacaatcgtgcggcatttaacgcctggtggaagcaacaaaaacaaaaa
gataaacgctttttgcacatgtcacgtgaagcgttaatgcagcatggtgctgatcatgtc
accgaatttgattacccagatacatggcaacaagaaaacttactcttgccgctgacgtac
cattttgatccagggcaagctgttgatggtgttgcggttcaaattccggttgcattactt
aatcaagtacaagaaaccggctttgattggcatattcctgcgtttaggcatgagttgatt
tgcgcattaattaagtcattaccaaaaacactgcgccgtaattttgttccagctccgaac
tacgccgatgctgtattagcggcaattgagcctatgcaaggcaatttaattgacgccata
agcactcgtttgctgcgtatgacaggggtacgtgttgagccagacgcttgggattactca
acgttggcccctcatttgcgtttgcagtttgaagttcgcgatgagcacgataagttactt
gctcgaggcctaaatttggctaagctgaaagctcagcttcagggcaaagtcaccgatacc
ttatcaaaagtggctgataaaggcatagaaaaagccgacttaacacagtggagctttggt
gagttaccagcttcctatgttaaaaagcaaggtcagtatgaaataaaagcgtttccagct
ttagtcgataaaaaagactccgctgcggttgagttatttgataacgaacaaaaagcacag
caggcgcaccaacagggcttacgtcgtttagtgcttttaaatgtaccgtcaccgattaag
tatttgcagcaaaatttacctaataaatctaagcttgggttgtattttaacccctttggt
aaagtgaatgatttgattgatgattgtattgctgcaggtgttgatagtttattgataaag
tacggcaacattcgtactcagcaagcatttgagcaggctaaagagcaaattcgtggtgag
ttgggcgatacggtggtcgacatagcaacgcaagttgagcaagtgctcagcattgctcac
agtcttaataagcgtatgaaagggcgcgtagatttaaccatgatcactgctcatggtgat
attaaatcacaattacaaagcctcgtttttaaagggtttgtaagtcagcacggcgcggca
aaaatggcggatttaattcgttatttaaaagcgattgaacgtcgtctagaaaaactccct
gttgatcctaatcgagatcgtttatgtgtacttgaactagaaaaagtggctgaacagtat
caaaaactggcgaataaaattcccaaaggaatgcccgtacctgatgaaatcaggtctatt
ttttggatgcagcaggaattacgtgtttctttatttgcacaaacactagggacaccttat
cctgtatctgcaaagcgtgttttaaacgcaatcaaagaatgtgagttataa
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