Pseudoalteromonas lipolytica: D0907_07215
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Entry
D0907_07215 CDS
T05890
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pdj
Pseudoalteromonas lipolytica
Brite
KEGG Orthology (KO) [BR:
pdj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdj03032
]
D0907_07215 (topA)
03400 DNA repair and recombination proteins [BR:
pdj03400
]
D0907_07215 (topA)
Enzymes [BR:
pdj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
D0907_07215 (topA)
DNA replication proteins [BR:
pdj03032
]
Prokaryotic type
DNA Topoisomerases
D0907_07215 (topA)
DNA repair and recombination proteins [BR:
pdj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
D0907_07215 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Zn_ribbon_LysW
NucS_N
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
AXV65062
UniProt:
A0AAD0WC35
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Position
1578387..1581053
Genome browser
AA seq
888 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGNDFIVKSSVGHVRDLPTSGSGKTKTAATKTPAEVRKMS
PEEKAAYKKQRDYKNLVARMGIDPEKGWEPHYEVLPGKEKVVQELKKLAENADKIYLATD
LDREGEAIAWHLEQIIGGEPEKYKRVVFNEITKNAIQQAFETPGELNTDMVYAQQARRFL
DRVVGFMVSPLLWAKVARGLSAGRVQSVAVRLLVEREREIKAFIPEEFWDVHADVKNSES
ALRLEVTKHADKAFKPVNEQQAMSAVRDLEKAQYEVVSVEEKPSKSKPSAPFITSTMQQA
ASTRLGYGVKKTMMLAQRLYEAGHITYMRTDSTNLSKDAVEMCRDYVAEQFGDKYLPKAP
ISYSSKGNAQEAHEAIRPSSVSILSGHLDGVEADAKKLYELIWRQFVACQMVPAEYDLTT
LTVGAGDYQLKAKGRVLRFDGWTRVQPAVRKKNEEDQSLPAVKQGEILSLVELDPKQHFT
KPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFFAEKMGEIVTDRLV
ENFEDLMNFDFTAKMEGRLDDIAEGERIWTQVLDKFYADFSKQLEIASGDEEQGGMRQNQ
MVETDIDCPTCGRKMGIRTASTGVFLGCTGYNLPPKERCTTTMNLVSGDEAIAADVEDVE
TETLMQMKRCPICETAMDSYLIDETRKLHVCGNNPACKGYVVEQGTFKIKGYDGPIIECD
KCGADMQLKSGRFGKYFGCSNDDCKNTRKLLKNGEAAPPKEDPVHLPELECEKSEAYFVL
RDGASGIFLAANTFPKSRETRAPKVEELKRFRDRISEKFYYLADAPTHDPDGNPSIVRYS
RKNKEQYVMTEVDGKATGWTAHYQGGKWVEESKKKAPAKKKAATKAKK
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcacttgtaattgtagagtctccagcaaaggctaaaacaattaataaatac
ttaggtaacgattttatcgtcaagtccagtgttgggcatgtacgtgatctaccgacttca
ggttcaggcaaaacgaaaacagcagcaacgaaaacccctgctgaggttcgaaaaatgtca
ccagaagaaaaagctgcgtataaaaaacaacgagattacaaaaatcttgttgcacgtatg
ggaattgaccctgagaaaggctgggaaccccattatgaagttttgcctggcaaagagaaa
gtcgttcaagaattaaagaagcttgcagaaaatgccgataaaatctatctcgcaaccgat
ttggatagagaaggggaagcgattgcatggcacctcgaacagattatcggtggtgagcca
gagaaatataagcgtgttgtttttaacgagattaccaaaaatgcgattcagcaagctttt
gaaacacccggtgaattaaacaccgatatggtgtatgcgcagcaagcacgccgtttcctt
gaccgagtagtgggttttatggtctcgccgttgttgtgggccaaagttgcacgcggtctc
tctgcaggccgtgttcagtctgttgctgttcgtttgcttgtagaacgtgaacgtgaaata
aaagcatttattcctgaagagttttgggatgtgcatgccgatgttaaaaatagtgagtct
gccttacgccttgaagttacaaaacacgctgataaggcatttaagcctgttaacgagcag
caagcaatgtctgcggttcgtgaccttgagaaagctcagtatgaagttgtaagcgttgaa
gaaaagccaagtaaaagcaaaccgagtgctcctttcattacatcgactatgcaacaggcc
gcgagcactcgcttaggctatggtgttaaaaagaccatgatgcttgctcagcgtttgtat
gaagcaggtcatattacctatatgcgtactgattcaaccaacttgtcaaaagatgcggtt
gaaatgtgccgtgactatgttgctgagcagttcggtgataagtacctaccaaaagcacct
attagctacagctctaaaggcaatgcacaagaagcgcacgaagcgattcgtccttcaagt
gtttctatattgtcgggtcatttagacggtgttgaagccgatgcgaaaaaattatatgag
ttaatttggcgtcaattcgtcgcgtgtcaaatggtgccagcagaatatgatttaacaacc
ttaacggttggcgcgggtgattaccaattaaaagcaaaaggccgtgtccttcgttttgat
ggttggacaagagtacagcctgctgtgcgtaagaaaaatgaagaagatcagtcactcccc
gctgtaaagcaaggtgaaattctgagcttagttgagcttgacccgaaacaacattttaca
aaaccacctgctcgttttagtgaagcaagcttggttaaagagcttgagaaacgaggtatt
gggcgtccatcaacgtatgcctcaattatttcaaccattcaggaccgtggttatgtgcga
gttgaaaaccgtcgtttctttgctgagaaaatgggagagatcgttactgaccgcttagtt
gaaaactttgaagatttaatgaacttcgatttcacagcaaaaatggaaggtcgcctagat
gatatcgctgaaggcgagcgcatctggacgcaagtactcgataagttttatgcagacttt
tcaaaacagcttgaaatcgcttcaggagatgaagaacaaggtggtatgcgtcagaaccaa
atggttgaaacagatatagattgtccaacctgtggccgtaaaatggggattcgtactgca
tcgactggtgttttcttagggtgtacaggatacaacttaccgcccaaagagcgctgtact
acgacaatgaatcttgtatctggtgatgaagccattgctgccgatgttgaagacgtcgag
acagaaacgttgatgcaaatgaagcgttgccctatctgtgaaacagctatggattcatac
ctaattgatgaaacccgtaagctgcatgtctgcggtaataacccagcctgtaaaggctat
gtggttgagcaaggcacgtttaaaattaaagggtatgacggcccaataatcgaatgcgat
aaatgcggtgctgatatgcaactaaaatctggccgattcggtaaatattttggttgtagt
aacgatgattgtaaaaatacccgtaaactacttaaaaatggtgaagctgcgccaccaaaa
gaagatcctgttcatttaccagaattagagtgtgaaaagtcagaagcgtattttgtgctg
cgtgacggcgcgtcgggtattttcttagcggcgaatacattcccgaaatcacgggaaacg
cgagctcctaaagttgaagaattaaaacgttttagagaccgtatttctgagaagttttat
tacctagcagatgctcctacgcatgatccagatggtaacccatcaattgttcgttatagc
cgtaaaaataaagaacagtatgtgatgacagaggtagacggcaaagcaacaggctggaca
gctcattatcaaggtggaaaatgggtagaagaaagtaagaagaaggcccccgctaaaaag
aaagctgcaacaaaggctaaaaagtag
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