Pseudoalteromonas lipolytica: D0907_09255
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Entry
D0907_09255 CDS
T05890
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pdj
Pseudoalteromonas lipolytica
Pathway
pdj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D0907_09255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdj03019
]
D0907_09255
03009 Ribosome biogenesis [BR:
pdj03009
]
D0907_09255
Enzymes [BR:
pdj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
D0907_09255
Messenger RNA biogenesis [BR:
pdj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D0907_09255
Ribosome biogenesis [BR:
pdj03009
]
Prokaryotic type
rRNA processing factors
D0907_09255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Cementoin
Motif
Other DBs
NCBI-ProteinID:
AXV65448
UniProt:
A0AAD0RZM4
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All DBs
Position
2029299..2032568
Genome browser
AA seq
1089 aa
AA seq
DB search
MKRMLINATQQEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIARTYFPQGYTFQGRPNIRDVIKEGQEVIVQVDKEERGQKGAALTTFI
SVAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSRLELPKGMGLIVRTAGVGKSFEEL
DYDLKALLVHWDAIQQAADSGPAPFLIHQESNVIFRAIRDYLRRDIGEILIDKARVFEEA
KAHIERFRPDFMSRVKLYQGDVPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSKATKGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVEN
RLKDAARPDRARVQIGKISRFGLLEMSRQRLRPSLGEASQGPCPRCNGQGTIRSNESIAL
SILRLIEEEAIKDNTSQVNAQVPVAVAAYLLNEKRRSVHRIEKRHSVDVVIIPNQHMETP
HYEVVRLRKDETIETVSYEQVVAPEPEAFEMAKAPTAPVREEPVLKGVVMPTNPAPQAAP
KAEQPAQDVKKSDGGLFAAIGKWFKSLFSNSEEETEKEQEEKKAAQQRSNNRRNNDNRRR
SNNQRRRNNTRNKRPSDVEAKEDKPATNSAPEQKESNENRNKRRRNSTNRKRNEKRTDDV
ETTSTEAVQETQTEQPKETKPKVRRQRRNIRKKVRLQDENAEEVKSTQSSDTVQAEKTDK
AAKPAKQAKEAKDDVVPEVKSETPAQTEVKAEKPAKADVKSVKTEETNTPVEEQNVNAES
VADDEQAQPRTRSRRSPRHLRAAGQRRRRPEQDEKQNEDKGDTPAFIPVADQAAAEYEAE
LKAKQAQTEQPVEAPESANTDEPVKAEEPVKAEEPVKTEEPVQADEPVKAEEPVKTEEPV
QAEEPVKTEEPVQADEPVKAEEPVKAEEPVKAEEPVKAEEPVKAEEPVQSEEPVQAEEPV
QAEEPVTTEEPVKADEPVKAEEPVQAEEPVKAEEPVKADEPVKAEEPVKADEPVHAKQAP
NNERTVLVKGSASAAMAKPAPVADSEPVPTPGAMAHDKREAIPDSGLRAGSIKPAGKARA
DMAKTLSAD
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgctaatcaatgcgacgcagcaagaagaaatgcgcgttgcactggttgat
ggccagcgcctgtatgatttagacatagagagcccaggtcacgaacaaaaaaaagccaat
atttacaagggtaaaattacccgtatcgaaccatcattagaagcagcctttgttgattat
ggcgcggaaagacatggtttccttccacttaaagaaattgcacgcacatacttcccacaa
ggctatacattccaaggtcgtccgaatattcgtgacgtaatcaaagaaggccaagaagta
attgttcaggttgataaagaagaacgtggccaaaaaggcgcggcactaacaacctttata
agcgtagcaggcagctatttagtgcttatgccaaataaccctcgtgccggcggtatttca
cgtcgtattgaaggtgatgagcgtactgaactaaaagaagcgctaagccgtttagaactt
cctaaaggtatggggctcattgtccgtactgcgggtgttggtaaatcattcgaggaacta
gactacgacttaaaagcgcttttagttcactgggatgccattcaacaagctgcagatagc
ggccctgcaccattcttaattcaccaagaaagtaacgttattttccgtgctatccgcgac
tatctacgtcgtgatattggtgaaattttaattgataaagcccgtgtttttgaagaagct
aaagcgcacattgaacgcttccgccctgatttcatgagccgtgttaagctttatcaaggc
gatgtgccattattcacacattaccaaatcgaaagccaaattgagtcagcgttccaacgc
gaagttcgcttaccttctggtggttcaatcgttattgatccgacagaagcgcttacctct
atcgatattaactcgtcaaaagcaaccaaaggcggtgatatcgaagagaccgcgcttaat
acgaacctagaagccgctgatgaaattgcacgtcaattacgtctacgtgacttaggtggt
cttattgttatcgattttatcgatatgacaccacctcgccaccaacgtgaagttgaaaat
cgcctaaaagatgctgcacgtccagaccgtgctcgcgtacaaataggcaaaatttcacgc
ttcggccttcttgaaatgtcacgtcaacgcctgcgtccatctctaggtgaagcaagccaa
ggtccgtgtccgcgttgtaatggtcaaggcactattcgttcaaacgaatcaattgcattg
tctatccttcgtttaatcgaagaagaagcaatcaaagacaatacatcgcaagtaaacgca
caagtacctgttgcggtagctgcttacttattaaatgaaaaacgccgtagtgtgcaccgt
attgaaaaacgccatagtgttgatgtggtcattattccaaatcaacacatggaaacaccg
cactatgaagtagttcgtttacgcaaagatgaaacgattgaaactgttagctatgagcaa
gtcgttgcaccagagccagaagcatttgaaatggctaaagcacccacagcaccggttcgt
gaagagcctgtgttaaaaggtgttgttatgccaacaaacccagcgccacaagctgctcca
aaagctgaacaaccagctcaagacgttaagaaaagtgacggtggtttatttgcagccatc
ggtaaatggtttaaatcactcttcagcaactctgaagaagagactgaaaaagagcaagaa
gagaaaaaagcggcacaacagcgcagcaacaaccgtcgtaataacgacaaccgtcgcaga
agcaataaccaacgtcgtcgtaacaacactcgtaataagcgcccttcagacgttgaagcg
aaagaagataaaccggccactaattcagctcctgagcaaaaagaaagtaacgaaaaccgt
aataagcgccgtcgcaattcgactaaccgaaagcgaaatgaaaagcgtactgatgacgta
gaaacaacgtcaacagaggcagttcaagaaacgcaaacggagcaaccgaaagagactaaa
cctaaggttcgccgtcaacgtcgtaatattcgtaagaaagtgcgtttacaagacgaaaat
gccgaggaagtgaaatcaactcagagcagtgatactgttcaggctgagaaaacagacaaa
gcagcaaagcctgccaaacaggcgaaagaagcgaaagacgatgtagtaccagaggttaaa
tctgaaacgcctgcacagactgaggttaaagcagaaaaacctgcaaaagctgacgttaaa
tcggttaaaacagaagaaaccaacacaccggttgaggagcaaaatgtaaacgctgagtca
gttgctgatgatgaacaagcacagccgcgcacacgctcacgtcgttcacctcgtcacctt
cgtgcagctggacaacgccgtcgtcgtcctgagcaagatgaaaagcaaaatgaagataaa
ggtgacacacctgcctttattcctgttgcggatcaagctgctgctgaatatgaagctgaa
ttaaaagctaaacaagcgcaaactgagcaaccagttgaagcgcctgaatcagctaacact
gatgagccagttaaagctgaagagccagtaaaagctgaagaaccagtaaaaactgaagaa
ccagtgcaagctgacgaaccagtaaaagctgaagaaccagttaaaactgaagagccagta
caagctgaagaaccagttaaaactgaagagccagtacaagctgacgaaccagtaaaagct
gaagaaccagtaaaagctgaagaaccagtaaaagctgaagaaccagtaaaagctgaagaa
ccagtaaaagctgaagaaccagtacaatctgaagagccagtacaagctgaagaaccagtg
caagctgaagaaccagtaacaactgaagaaccagttaaagctgacgaaccagtaaaagct
gaagaaccagtacaagctgaagagccagttaaagctgaagaaccagtaaaagctgacgaa
ccagtaaaagctgaagagcctgttaaagctgacgaaccagtgcacgctaaacaagcacct
aacaatgaaagaacagtgttagttaagggttcagcaagcgctgcaatggcaaaacctgca
ccagttgcagacagcgagccagtaccaacaccaggtgctatggcacacgataaacgtgaa
gctattccagacagtggtttacgcgcaggttcaattaaacctgccggtaaagcccgtgct
gatatggctaaaacattatcggctgactag
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