Pseudoalteromonas donghaensis: D0907_18405
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Entry
D0907_18405 CDS
T05890
Name
(GenBank) exonuclease SbcD
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pdj
Pseudoalteromonas donghaensis
Brite
KEGG Orthology (KO) [BR:
pdj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdj03400
]
D0907_18405
DNA repair and recombination proteins [BR:
pdj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
D0907_18405
Archaeal homologous recombinant proteins
D0907_18405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
AAA_21
ABC_tran
SlyX
Laminin_II
ZapB
SMC_N
REV1_C
NTPase_1
MMR_HSR1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AXV67288
LinkDB
All DBs
Position
unnamed1:complement(474201..477851)
Genome browser
AA seq
1216 aa
AA seq
DB search
MKILAIRVHQLASIVDAEVDFTASPLKEAGLFAITGDTGAGKSTLLDAICLALYTKTARL
RGDTGNKIDFNGDNIKLNDSRNLLRRGAGLGYAEVDFIGQDKHHYRARLSFSRARNKANG
KLQQAQHTLHSLPDENLIADRSNASKEIERIIGLSFDQFSRAVLLAQHEFAAFLKATGDE
RAQLLECLTGTDKFSRIGQRIFERHREQQQALEQLKLSLANFKVLSPEELAAKQAEHQSL
LTKQTELQNQIKQLEQYQTWYKQAAHLSEQITQAEHTKHQAEQQLQQLEDKAKQAKQAQQ
CLEIKDNRERTATIKAQQVQLVENREQLLKIDHNALISDAEQTLNKHTEQLKQAKQTQKD
AQPIISQAREYDKQLAVLNQQAHAQKAQLEKANQHNTELSNKLNTAKAEQQQQHQQQQAL
TNWLATHAQWQPLAKDWSYYKSELSRFNQLQLRIDKTNQTVKSLQPTVTEQQHSRQQLQK
QYQALEHALKTLSEQDASFKDRLNSQSMADIDAQLEAIKHLIEKRQLWQSNQQQLKVWQS
QSDTLNQNKQQLQTALSAIGQDVENAQQQLTLCDKNLQQVQLRASEGVSQLRATLKAGEP
CAVCGSTEHPFQHNVVNAQFSQLINDFTEQLNSAKQHLNNQQALQQTKSNELTACTQQIA
SLEGQVSELTDQQNTLKQTMAANRTELNDLTEAQLNERQQQLTSQKQQYFKVLEQQQQLQ
TSLTAKQAEFNQKGQALHAAEQKLSETQLQLNTEQTRLNELNAEHQQLHTTLDDTFKNAP
WWQQLNEQQVSLETIAEDVQRYQTKLQQSDELTKALTSTEQTIAHLLPQQHEAAEAKAKC
TAQLAHTENEQADLHEKRIALFADANMSVDEYIAQLEQAIDSLQQTVQQAQQHLSNAVKA
RDEHAIQISHLTMREKELSDEQAALEKRFTQWFSEFKAQHPSLSEDAITTLLSISSESIK
QTLNEHHAAENALKETQAALKQLHSSQSAHLKDQPKHSESDTETELANAVNAQQHTNQSL
MQVGSELHTHQQNSQALADKQQLLVQQQKRYEHWHLLNKVLGDASGKTMRNLAQTQTLKI
LLHYANSHLHTLNKRYKLTAIGQTLDIAIIDKDMADEQRSVNTLSGGESFLVSLALALGL
ASLSSNKVQINSLFIDEGFGTLDSETLSIAMDALDSLQAQGRKVGVISHVSEMTERVATQ
VHVAKKPGGYSTISVI
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattttagcgatacgtgttcatcaattggcatccattgtcgatgccgaagtcgat
tttacagcttcgccattaaaagaagccgggctatttgccattacgggtgatactggggca
ggtaaaagtacgttacttgatgccatttgtttagcactgtataccaaaaccgcgagactt
cgtggcgacacaggtaataaaattgactttaatggcgataatatcaagctcaatgactcg
cgaaatttattacgccgtggggcagggctgggctatgccgaagtggactttataggccaa
gataaacatcactaccgtgctcgcttgagctttagccgcgcacggaacaaagcgaatggc
aaattacaacaagcgcaacacacgcttcattcattacctgacgaaaacttaattgccgat
agaagtaatgccagcaaagaaatagagcgcattattggtttaagctttgatcaattttcg
cgggcggtgttacttgcccagcatgagtttgcagcctttttgaaagcaacaggggatgaa
cgggcacaactgttagaatgcttaactggcaccgacaagtttagtcgtattgggcaacgt
atatttgaacgtcaccgcgaacaacaacaggctcttgagcaattaaaactgagcttggcg
aactttaaggtattaagccccgaagagttagcggctaagcaagctgagcatcagtcgcta
ttaacgaagcaaactgaactacaaaaccaaataaagcagctggagcaataccaaacttgg
tataaacaggcggcgcatctatcagaacaaataacgcaagcggaacacacaaagcaccaa
gctgagcagcaattacaacaacttgaagacaaggcaaagcaagccaaacaagcgcagcag
tgcttagaaataaaagataaccgtgagcgcacagcaacaattaaagcccagcaagtgcag
cttgtagaaaaccgtgagcaacttttaaaaattgatcataacgccctgataagtgacgca
gagcaaacgctaaacaaacacactgagcagttaaagcaagcgaaacaaacgcaaaaagat
gctcagccaatcattagccaagcacgtgagtacgataaacaactggcggtattgaaccag
caagcacacgctcaaaaagcacaactcgaaaaagcgaaccagcataacaccgagctgagc
aataaacttaatacggcaaaggctgagcaacaacagcaacatcagcaacaacaagcgctc
actaattggttagcgacacatgcgcagtggcaaccattagcgaaagactggtcatattat
aaaagtgaattaagccgctttaatcaactgcagcttcgtattgataaaacaaatcaaacg
gtaaagtcacttcagcctacggttactgaacagcagcacagtcgtcagcaattacaaaaa
cagtatcaagcgcttgagcacgcactaaaaacgctgagtgaacaagacgctagcttcaaa
gaccgtttaaatagtcagtctatggccgacatagatgcacaactagaggcgattaaacac
cttattgaaaagcgtcaactgtggcaaagtaatcagcaacaattaaaagtgtggcaaagc
caatcagacaccttaaatcaaaataaacaacagttacaaacagccctcagcgcgataggg
caggatgtagaaaacgcccaacaacagctgacactatgtgataaaaatttacagcaagtt
cagttaagagccagtgaaggggtaagccaattaagagctactttaaaagctggtgagcca
tgtgctgtttgtggttcgactgaacacccgtttcaacataacgtggttaatgcgcagttt
agtcagctcattaatgattttactgagcagcttaatagtgccaaacagcacttaaataat
cagcaagctttacaacaaacaaaaagtaatgaactgacagcctgtactcagcaaatagcg
tcattagaggggcaggtgagtgaactcaccgaccagcagaacacgctcaaacagaccatg
gcggcaaatcgtacagagctgaatgatttaacagaggcgcaattaaacgagcgtcagcag
cagctcacgagccagaaacagcagtattttaaagtgcttgagcaacaacagcagctgcaa
acatcattaacagccaaacaagcagagtttaatcaaaaagggcaagccctgcatgcagca
gagcaaaaactgagtgaaacacagctgcaactcaacactgaacaaacgcgtttaaacgag
ctaaacgcagagcatcagcaactgcataccacactcgacgacacctttaaaaatgcccct
tggtggcaacagctcaatgagcagcaggtgtcattagagactattgcagaggatgtgcaa
cgctatcaaacgaaacttcaacaatcagatgagctaacgaaggctctaacaagcactgag
caaaccatcgcgcatttactgcctcagcaacatgaagcagcagaagcgaaagctaagtgc
actgcgcaacttgcccataccgagaacgagcaggctgatttgcatgaaaaacgcattgcc
ttgtttgccgatgcgaacatgtcggtcgatgagtatattgcacaacttgaacaggccatt
gactcgttacagcaaacagtgcaacaggctcaacaacacctaagcaatgcggttaaagca
cgtgacgagcacgctattcaaataagccacttaacgatgcgtgaaaaagagttaagcgat
gaacaagctgcgcttgaaaaacgattcacgcagtggtttagcgagtttaaagcacagcat
ccttcactttctgaagacgcaattacaacgcttttaagcatcagtagcgaatcaataaag
caaacactcaacgagcaccacgcggcagaaaatgcgctaaaagaaactcaagcagcttta
aaacagctgcattcatcgcagtcggcgcatttaaaagatcagccaaagcacagcgaaagc
gacactgaaactgaactagctaacgccgttaatgcccagcaacatacgaatcaatcgctg
atgcaagtaggcagtgagctgcacacgcaccaacaaaatagccaagcattagcagataaa
cagcaattattagtgcaacagcaaaagcgctacgagcactggcatttacttaataaagtg
ctgggtgatgccagtggtaaaaccatgcgtaacttagcgcaaacgcaaactctcaaaata
ctgctgcattatgccaatagccacttacacactttaaacaagcgctacaaattaacggct
atcgggcaaacgctggatattgccatcattgataaagacatggccgatgagcagcgttct
gttaatactttgtcaggcggggagtcgtttttagtctcgctggcactggctttggggctt
gcctcgttgtcatcgaataaagtgcaaataaactctttgtttatcgatgaagggtttggt
acgttggacagtgaaacgttaagcatcgcgatggatgctctcgattcgctgcaagcacaa
ggccgtaaagtaggggttatttcgcatgtatctgaaatgaccgaacgcgtggccacgcag
gtacatgtagcgaaaaaacccggtggttactcaaccatctctgttatttaa
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integrated database retrieval system
