Pseudomonas aeruginosa DK2: PADK2_02160
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Entry
PADK2_02160 CDS
T02161
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pdk
Pseudomonas aeruginosa DK2
Pathway
pdk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PADK2_02160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdk03019
]
PADK2_02160
Enzymes [BR:
pdk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PADK2_02160
Messenger RNA biogenesis [BR:
pdk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PADK2_02160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_25
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AFM62725
LinkDB
All DBs
Position
complement(471711..473630)
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AA seq
639 aa
AA seq
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MSFSSLGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL
ERLFPAGHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMN
PQIQALAKGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAK
LPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALL
AHLVTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDV
RILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKAIEKMTRQRIPDGDAQGFDPEAVLPEVAQPEPREAPQKQPRRDKERRSSRERKPKDAQ
ASNPDSNVAAAQDGTEKPAGKRRRRGGKNKENREAGQAQQPRQSREARPAKPNRPPEVDG
NRDPEEFLDDDFDNFGNRADYVSPYQGQENKGRGRRGGQQKPQGGTGQQGRGQGQGQARG
KSQGAAQGGARGQGAGQGKAKKPRAGKPRGQGRENASRMSDAPLREPSEYGTGKQPSRQP
VVINKRDLVRMDRFPTAEQLDELEPRRKGERPALLTRNR
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgtccttttcttccctcggactctccgaggcgcttgcccgcgctgtggaggctgcgggc
tacagccagcccactcccgtgcaacagcgggcgattcccgccgtgttgcaaggtcgcgac
ctgatggttgcggcacagaccggcaccggcaagaccggtggtttcgccctgccggtactg
gagcgcctgttccccgccggtcatcccgaccgcgaacaccgccacggcccgcgccaggcg
cgcgtgctggtactgaccccgacccgtgagctggccgcccaggtgcatgacagcttcaag
gtctacgcccgcgacctgccgctgaacagcacctgcatcttcggcggggttggcatgaac
ccgcagatccaggccctggccaagggcgtcgacgtactcgtcgcctgccccggccgcctg
ctcgacctggccgggcagaacaaggtcgacctgtcccacgtggaaatcctcgtcctcgac
gaagccgaccgcatgctcgacatgggcttcatccacgatgtgaagaaggttctcgccaag
ctgccgcccaagcgccagaacctgctgttctcggcaaccttctcgaaagacatcgtcgac
ctcgccaacaagctcctgcacaacccggaacgcatcgaggtaacgccgccgaacaccacg
gtcgagcgcatcgagcaacgcgtgttccgcctgccggcgccgcagaagcgcgccctgctg
gcgcacctggtaaccgtcggcgcctgggaacaggtgctggtcttcacccgtaccaagcac
ggcgccaaccgtctcgccgagtacctgaccaagcacggcctgccggccgccgcgatccat
ggcaacaagagccagaacgcgcggaccaaggcgctggccgacttcaaggccaacgacgtg
cgcatcctggtggcgaccgacatcgccgcccgcggcctggatatcgaccagttgccccat
gtggtcaactacgagctgcccaacgtcgaggaagactatgtccaccgcatcggccgtacc
ggccgagccggacgcagcggcgaggcgatctcgctggtggcgccggacgaagagaagctg
ctcaaggccatcgagaagatgaccagacagcgtattcccgatggcgatgcccagggtttc
gaccccgaggccgtgctgcccgaggtggcccagccggagccccgcgaggcgccgcagaag
cagccgcgccgcgacaaggaacggcgcagcagccgcgagcgcaagccgaaagacgcccag
gcgagcaaccccgacagcaatgtcgctgcggcccaggacggtaccgagaagccggctgga
aagcgccgccgtcgcggtggcaagaacaaggaaaaccgcgaggccggccaagcgcagcag
ccgcggcagagccgcgaagcgcgtccggccaagcccaatcggccgccggaagtcgacggt
aatcgcgatccggaagagttcctcgacgacgacttcgacaatttcggcaaccgcgccgac
tacgtcagcccctaccagggccaggaaaacaagggacgcggacgccgcggtggccagcag
aaaccccagggcggcaccggccagcagggtcgtggccaaggccagggccaagctcgcggc
aagagccagggcgccgctcaaggcggcgctcgcggtcagggtgccggccagggcaaggcg
aagaaaccgcgcgccggcaagccgcgcggccagggtcgcgagaatgcctcgcggatgagc
gacgcgccgctgcgcgagccgtccgagtatggcaccggcaagcagccgagccgccagccg
gtggtgatcaacaagcgcgacctggtgcgcatggatcgcttccccaccgccgagcagctc
gacgagctggaaccgcggcgcaagggcgagcgccccgcactgctgacccgcaaccgctaa
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