Pseudomonas aeruginosa DK2: PADK2_05010
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Entry
PADK2_05010 CDS
T02161
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pdk
Pseudomonas aeruginosa DK2
Pathway
pdk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PADK2_05010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdk03019
]
PADK2_05010
Enzymes [BR:
pdk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PADK2_05010
Messenger RNA biogenesis [BR:
pdk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PADK2_05010
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
TMEM260_2
Motif
Other DBs
NCBI-ProteinID:
AFM63295
LinkDB
All DBs
Position
complement(1081919..1083490)
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AA seq
523 aa
AA seq
DB search
MLYTGARSFLNHYEIAVLKALKKIFGKADGTQPQSGSSPVPQGPAGATAKGTAPTGEKPT
EKRPRKPRPARADNESGAPRAAEKAEKGEKPAKPAGKEGRDAKPRSDKPRRERKPKPVDN
WKLEDFVVEPQEGKTRFHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQ
TGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLN
VMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDM
GFIPQVRQIIRQTPHKGERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQ
HVYAVAGSDKYKLLYNLVAQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQH
KRIRTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGAS
GTSISFAGEDDAFALPPIEELLGRKITCEMPPAELLKPVPRKH
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgctttacactggcgcccgttcattccttaaccactacgagatcgccgtgctcaaagca
ctcaagaaaatcttcggcaaggccgacggaacccagccgcagagcggttcctccccggtc
ccgcaaggccctgccggcgctaccgcgaaaggtaccgcccccaccggcgaaaagccgacc
gagaaacgcccacgcaaaccgcgccccgcgcgcgccgacaacgagtccggcgccccgcgc
gccgctgaaaaggccgagaaaggcgaaaagcccgccaaacccgccggcaaagaaggccgg
gacgccaagccgcgcagcgacaagccgcgccgcgaacgcaagccgaagccggtggacaac
tggaagctggaagacttcgtggtcgaaccgcaggaaggcaagacccgcttccacgacttc
aacctcgccccgagcctgatgcacgccatccatgacctcggcttcccctactgcaccccg
atccaggcgcaggtactgggcttcaccctgcgcggccaggacgccatcggccgcgcccag
accggcaccggcaagaccgccgcgttcctcatctcgatcatcacccaattgctgcagacc
ccgccgccgaaagagcgctacatgggcgagccgcgcgcgctgatcatcgccccgacccgc
gaactggtggtacagatcgccaaggacgccgcggcgctgaccaagtacaccgggctgaac
gtgatgaccttcgtcggcggcatggacttcgacaagcaactcaagcagctggaagcgcgc
ttctgcgacatcctggtagccaccccaggccgtctgctggacttcaaccagcgcggcgag
gtgcacctggacatggtcgaggtgatggtcctcgacgaagccgaccgcatgctcgacatg
ggcttcatcccgcaggtccggcagatcatccggcagaccccgcacaagggcgaacgccag
accctgctgttctcggcgaccttcaccgacgacgtgatgaacctcgccaagcagtggacc
gtcgatccggcgatcgtcgagatcgagccggagaacgtcgccagcgacaccgtcgagcag
catgtctacgccgtggccggcagcgacaagtacaagctgctgtacaacctggtggcacag
aacaactgggaacgggtgatggtcttcgccaaccgcaaggacgaagtccgccgcatcgag
gaacgcctgaccaaggacggcatcagcgccgcccagatgtccggcgacgtaccgcagcac
aagcgcatccgcaccctggaaggcttccgcgaaggcaaaatccgcgtcctggtggcaacc
gacgtggccggccgcggcatccacatcgacggcatcagccatgtgatcaacttcaccctg
ccggaggacccggacgactacgtgcaccgtatcggtcgtaccggccgcgccggcgcctcg
ggcacctcgatcagcttcgccggcgaggacgatgccttcgccctgccgccgatcgaagaa
ctgctgggccgcaagatcacctgcgagatgccgccggccgaactgctcaagccggtaccg
cgcaagcactga
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