Pseudomonas aeruginosa DK2: PADK2_09290
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Entry
PADK2_09290 CDS
T02161
Name
(GenBank) DNA topoisomerase I subunit omega
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pdk
Pseudomonas aeruginosa DK2
Brite
KEGG Orthology (KO) [BR:
pdk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdk03032
]
PADK2_09290
03400 DNA repair and recombination proteins [BR:
pdk03400
]
PADK2_09290
Enzymes [BR:
pdk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PADK2_09290
DNA replication proteins [BR:
pdk03032
]
Prokaryotic type
DNA Topoisomerases
PADK2_09290
DNA repair and recombination proteins [BR:
pdk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PADK2_09290
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
YubG_C
Motif
Other DBs
NCBI-ProteinID:
AFM64147
LinkDB
All DBs
Position
2016535..2019141
Genome browser
AA seq
868 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGSQYVVKSSIGHIRDLPTSGSSSSKEPAAKGRKSASEAP
ALSPKEKARRQLVSRMGVDPEHGWKAKYEILPGKEKVIDELRRLAKDADTVYLATDLDRE
GEAIAWHLREAIGGDESRYKRVVFNEITKKAIQEAFSQPGELDINRVNAQQARRFLDRVV
GYMVSPLLWQKIARGLSAGRVQSVAVKLVVEREREIRAFVPEEYWEVHADLGTAKGANVR
FEVTREKGEAFKPLNEAQAMAALEKLKASAYSVAKREDRPTSSRPSAPFITSTLQQAASN
RLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAIGMVRGFIEDEFGQKYLPGKANVY
SSKEGAQEAHEAIRPSDVNLKPTQLSGMERDAERLYDLIWRQFVACQMTPAEYLSTSVSV
TAGDFELRAKGRILKFDGYTRVLPQQSKPGEDDVLPEMKEGENLKLIKLDPSQHFTKPPA
RYSEASLVKELEKRGIGRPSTYAAIISTIQERGYVTTHNRRFYAEKMGDIVTDRLNESFA
NLMDYGFTAGMEEHLDDVAQGERDWKHLLDEFYGDFKKKLEVAEVSEKGMRANQPTLTNI
PCRECGRPMMIRTASTGVFLGCSGYSLPPKERCKATVNLIPGDEIAADDEGESESRVLRG
KHRCPICSTAMDAYLLDEKHKLHICGNNPDCPGYEIEEGQYRIKGYEGPSLECDKCGSEM
QLKTGRFGKFFGCTNPTCKNTRKLLKNGEAAPPKMDAIRMPELKCEKVDDIYVLRDGASG
MFLAASQFPKNRETRAPLVSEIIPHKAELDPKYHYLCDAPQKDPDGRPAVIRFSRKTKEQ
YVQSEVDGKPTGWRAFYDGGKWKVEDKR
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgctggtcatcgtggaatccccggccaaggccaagaccatcaacaagtac
ctgggcagccagtacgtggtgaagtcgagcatcggccacatccgtgacctgcccaccagt
ggttcgtcgagttccaaggagccggcggccaagggccgcaagagcgcctccgaggcgccg
gcgctgtcaccgaaggagaaggccaggcgccaactggtctcgcgcatgggggtcgacccc
gagcatggctggaaggccaagtacgagatcctgcccggcaaggaaaaggtcatcgacgag
ctgcgccgcctggccaaggacgccgacaccgtctatctcgcgaccgacttggaccgcgaa
ggggaggccatcgcctggcacctgcgggaagccatcggcggcgacgaaagccgctacaag
cgcgtggtattcaacgaaatcaccaagaaggccatccaggaggccttctcccagcccggc
gagctcgatatcaaccgggtgaacgcccagcaggcgcggcgtttcctcgaccgcgtggtc
ggctacatggtctcgccgctgctctggcagaagattgcccgtgggttgtccgccggccgc
gtgcagtcggtggcggtgaagctggtggtggagcgcgaacgcgagattcgcgccttcgtc
ccggaagagtactgggaagtgcatgccgacctcggtaccgccaagggcgccaacgtgcgc
ttcgaggttacccgtgagaagggcgaggccttcaagccgctcaacgaagcccaggccatg
gcggccctggaaaagctcaaggcctcggcctatagcgtcgccaagcgcgaggaccggccg
acctccagccgaccctcggcgccgttcatcacttccaccctgcagcaggcggcgagcaac
cgcctgggcttcggggtgaagaagaccatgatgatggcccagcgtctctacgaggccggc
tacatcacctacatgcgtaccgactcgaccaacctgtcggccgatgccattggcatggtc
cgcggtttcatcgaggacgagttcggccagaagtacctgccgggcaaggccaacgtctac
tcgagcaaggagggcgcccaggaagcgcacgaggcgatccgtccttccgacgtcaacctc
aagccgacccagctgtccggcatggagcgtgacgccgagcgcctgtacgacctgatctgg
cgccagttcgtggcgtgccagatgaccccggccgaatacctctcgaccagcgtgagcgtc
accgccggcgatttcgagctgcgcgccaagggccgcatcctcaagttcgacggttatacc
cgggtactgccgcagcagagcaagccgggcgaggacgacgtcctgccggaaatgaaggaa
ggcgagaacctcaagctgatcaagctcgatccgagccagcacttcaccaagccgccggcg
cgctactccgaagcgagcctggtcaaggaactggagaagcgcggtatcggccgcccctcg
acctacgcggcgatcatctccaccatccaggagcgcggctacgtaaccacccacaaccgc
cgcttctatgcggagaagatgggcgacatcgtcaccgatcggctcaacgagagcttcgcc
aacctgatggactacggtttcaccgccgggatggaggagcatctcgacgacgtggcccag
ggcgagcgcgactggaagcacctgctcgacgagttctacggcgatttcaagaagaagctc
gaggtggccgaagtcagcgagaaggggatgcgcgccaaccagccgaccctgaccaacatt
ccctgccgcgagtgcggccggccgatgatgattcgtaccgcctccaccggcgtgttcctc
ggctgctcgggctacagcctgccgccgaaggagcgttgcaaggcgaccgtcaacctgatt
cccggcgacgagatcgccgcggacgacgagggcgagtccgagtcgcgggtgttgcgtggc
aagcatcgctgcccgatctgcagtaccgcgatggacgcctacctgctggacgagaaacac
aagctgcatatctgcggcaacaaccccgactgtccgggctacgagatcgaggaaggccag
taccggatcaagggctacgaagggccgagcctggaatgcgacaagtgtggcagcgagatg
cagttgaaaaccggccgtttcggcaagttcttcggttgcaccaatccgacctgcaagaac
acccgcaagctgctgaagaatggcgaggcggcgccgccgaagatggacgccatccgcatg
cctgaattgaagtgcgagaaggtggacgatatctacgtgctgcgcgacggcgcttcgggc
atgttcctggccgccagccagttcccgaagaaccgcgagacccgcgcgccgttggtgagc
gagatcatcccgcacaaggccgagctggatcccaagtaccattacctctgcgacgccccg
cagaaagacccggacggccgtcccgcggtgatccgtttcagccgcaagaccaaggagcaa
tacgtgcagtccgaggtcgatggcaagcccaccggctggcgcgccttctacgatggcggc
aagtggaaggtcgaagacaagcgctga
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