Pseudomonas aeruginosa DK2: PADK2_19170
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Entry
PADK2_19170 CDS
T02161
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pdk
Pseudomonas aeruginosa DK2
Brite
KEGG Orthology (KO) [BR:
pdk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pdk03016
]
PADK2_19170
Enzymes [BR:
pdk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
PADK2_19170
Transfer RNA biogenesis [BR:
pdk03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PADK2_19170
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Ribosomal_L27_C
Motif
Other DBs
NCBI-ProteinID:
AFM66107
LinkDB
All DBs
Position
complement(4135800..4136930)
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AA seq
376 aa
AA seq
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MFVTAPEIQWIRDDASLAQQCREWRTQPYLALDTEFMRVDTFYPAAGLVQVGDGRQEWLI
DPLLIQDWSPFAELLEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYLGMAHS
MGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALDARLSEEKR
AWLLEDGAELVANLCRESDPREAYREVKLGWRLRPQQLAVLRELCAWREEQARLRNRPRN
HVLRERTLWPLARLLPKNKTDLAAIEDMHPRTVRQDGDFLIELIAQAARLPQSEWPEALP
EPLPPEVTPLLKSLRAIGQREAETLGMAPELMLRKKILEALLKSGYPDGPYELPDSLRGW
RRERMGQALLDALESA
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atgttcgtgaccgcgcccgaaatccagtggatccgcgatgatgccagcctggcgcagcaa
tgccgggaatggcgcacacagccgtacctcgcgctcgataccgagttcatgcgcgtcgat
accttctatcccgcggccggtctggtgcaggtgggcgatggccggcaggagtggctgatc
gatccgctgctgatccaggactggagccccttcgccgagctgctcgaagacgagcgggtg
gtgaaggtgctgcatgcctgcagcgaagacctcgaggtgttcctgcgcctcaccggcagc
ctgccggtgccgctgttcgatacgcagttggccgccgcctatctcggcatggcccattcg
atgggctactcgaagctggtgaaggaggtgctggacatcgacctgcccaaggacgagacc
cgttccgactggttgcaacggccgctcaccgagatgcagatgcgctacgccgccgacgac
gtccagcacctcgcccaggtctacctggccctggatgcgcggctgagcgaggagaaacgc
gcctggctgctggaggacggcgccgaactggtcgccaacctctgccgcgagagtgatccg
cgcgaggcctaccgcgaggtcaagctgggttggcggctgcgtccgcagcaactggcggtg
ctccgcgaactctgcgcctggcgcgaggagcaggcacgcctgcgcaaccggccgcgcaac
cacgtgctgcgcgaacgtaccctgtggccgctggcgcgcctgctgccgaagaacaagacc
gacctggcggcgatcgaagacatgcatccgcgcaccgtgcgccaggacggcgacttcctc
atcgaactgatcgcccaggctgcgcgcctgccgcagagcgaatggcccgaggcgctgccc
gagccgctgccgccggaggtcaccccgctgctcaagagcctgcgcgccatcggccagcgc
gaagcggagaccctgggcatggcgcctgagctgatgctgcgcaagaagatcctcgaggca
ctgctcaagagcggctatcccgacggtccctacgaactgcccgattccctccgcggctgg
cgccgcgaacgcatgggccaggccctgctggacgccctggagagcgcatga
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