Pseudomonas aeruginosa DK2: PADK2_22325
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Entry
PADK2_22325 CDS
T02161
Name
(GenBank) exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pdk
Pseudomonas aeruginosa DK2
Pathway
pdk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pdk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PADK2_22325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdk03400
]
PADK2_22325
Enzymes [BR:
pdk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PADK2_22325
DNA repair and recombination proteins [BR:
pdk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PADK2_22325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AFM66730
LinkDB
All DBs
Position
complement(4809960..4813697)
Genome browser
AA seq
1245 aa
AA seq
DB search
MSQQQMPVALDPLDFPLHGSRLIEASAGTGKTFTIALLYVRLVLDHGGENAFGRPLSPPE
ILVVTFTDAATQELRERIRSRLGEAARCFSEPQERHDGLLVALRQQYPAERWPGCARLLR
LAAEWMDEAAVSTIHSWCYRMLREHAFDSGSLFTQNLETDQSELLAEVVRDYWRRNFYGL
TAPAAQAVASCYSGPETLGKALQPLLARQDADFRYADQALSAPESLTALLEQGGDWYRQL
DQLDAQARAAWRATRVELEALLRDLRPYLNGNSYRGKDSDETFDAWLQALADWSEGGEQP
ANLGKFGQTRIKLTAKRVAPEHAALRAIDAWAAHQEERPDLAPHLLLHALGEVGHELEIE
KQRRAEIGFDDLLSRLDRALQGPGGERLAQLIREQFPVALIDEFQDTDPVQYRIFERIYR
IAADPDEPQARETGLFMIGDPKQAIYAFRGADIHTYLRAREATRGRHYTLGKNFRSTAAM
VAAANRCFAFAEEHPRGAFRFAREGLENPVPFHAVDAQGRAERLLIDGAEAPAMTFWNLD
VEAGVLGSAAYRQEMAERSASAIRRWLSLADLGRAGFADEQGGWRALRPADIAILVRGRA
EAEAIRSALAARRLASVYLSDRDSVFDSQEAADLLHWLRACADPGADALLRVALATRSLH
LDWATLERLNQDELFWERMVLRFRDYRRSWQAQGVLPMLRRLLADFELPARLLRHADGER
SLTNLLHLAEWLQRAAVELDGEHALIRHLAEQVQSPGSEEILRLESDADLIKVVTIHKSK
GLEYPLVLLPFICSWRELDGNSGAPASFHEDGAAGRVIELARRKEQAARAYEQANDERLG
EDMRLLYVALTRARHSVWLGIAPLVASNSKSPELHKGALGYLLAGGATIGSDGLGQCLAA
LRGECREIVVEPAPEADAERYVAGRGQGLGQARETRRSSREKWWVASYSGLQLQASAGLD
DDEVLESDESQEPISAEEATFHEEGRSAEQPPVAHTSEMRDDLHRFPRGPAPGTFLHGLL
EWAGREGFDVARADAQRRRELVARRCDLRGWKDWAEPLDLWLEQYLAEPLRWPGGETSLA
GLVAYQVEMEFWFATHQVQAEAIDALVRRHTLGGAARPALAPTLLNGMFKGFVDLVFEHQ
GRFYVADYKSNWLGADDGAYSPEAMTAAVLENRYDLQYVLYLLALHRQLKARLPDYDYDR
HMGGAVYLFLRGARAATQGLHFERPPRELIERLDALFSGQPGAER
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atgagccagcagcagatgcccgtggccctcgatccgctggatttcccgttgcacggcagc
cgcctgatcgaggccagcgccggtaccggcaagacgttcaccatcgccctgctatacgta
cgcctggtcctcgaccatggcggcgagaacgctttcggccggccgctgagcccgccggaa
atcctcgtggtgaccttcaccgatgcggcgacccaggaactccgcgagcgtatccgcagc
cgcctgggcgaagcggcgcgttgtttctccgagccgcaggagcgccacgacggcctgctg
gtcgcgttgcgccagcagtatcccgccgagcgctggccgggctgcgcgcgcctgctgcgc
ctggccgcggagtggatggacgaggccgcggtatcgaccatccacagttggtgctaccgg
atgctgcgcgagcacgccttcgacagcggcagcctgttcacccagaacctggaaaccgac
cagagcgaattgctcgccgaagtggtacgggactactggcggcgtaacttctacggcctg
acggctccggcggcgcaagccgtggccagttgctacagcgggccggagacgctgggcaag
gccttgcagccgctgctggcgcggcaggacgccgacttccgctacgccgaccaggcgctg
agtgcgcccgagtcactgacagccttgctggagcagggcggcgactggtatcgccagctc
gaccaactggacgcgcaggcccgcgccgcctggcgcgcaacgcgcgtcgaactggaagcg
ctgctgcgcgacctgcgtccctacctgaacggcaacagctatcgcggcaaggacagcgac
gagaccttcgacgcctggctgcaagcgttggcggactggagcgagggcggcgagcagccg
gccaacctgggcaagttcggccagacccggatcaagctcaccgccaagcgcgtggcgccc
gagcatgccgcgctaagggccatcgacgcctgggccgcgcatcaggaagagcgtcccgat
ctcgctccccacctgttgttgcacgcgttgggcgaagtcgggcacgaactggagatcgag
aagcagcggcgtgccgagatcggcttcgacgacctgctcagccgcctcgaccgcgccttg
caggggcctggtggcgagcgcctggcgcaattgatccgcgagcagttcccggtggcgctg
atcgacgagttccaggataccgacccggtgcagtaccggatcttcgagcgcatctaccgg
atcgccgccgatcccgacgagccccaggcgcgggaaaccggcctgttcatgatcggcgac
cccaagcaggcgatctacgccttccgcggtgccgacatccatacctacctgcgcgcccgc
gaggccactcgcgggcggcattacacccttggcaagaacttccgctcgaccgccgccatg
gtggcggccgccaaccgctgcttcgccttcgccgaagagcatccgcgcggcgccttccgt
ttcgcccgcgaggggctggaaaacccggtgccgttccatgcggtggacgcccaggggcgc
gccgaacgtttgttgatcgacggtgccgaggcgccagcgatgacgttctggaaccttgat
gtcgaagccggcgtgctcggctccgcggcgtatcgccaggaaatggccgagcgcagcgcc
agcgccatccgccgctggctgagcctggccgacctgggccgcgccggcttcgccgacgag
cagggcggctggcgggcgttgcgcccggcggatattgccatcctcgtccgcggtcgcgcc
gaggccgaggcgatccgcagcgcgttggcggcgcgacgactggccagcgtctacctgtcc
gaccgcgactcggtgttcgacagccaggaagccgccgacctgctgcattggctgcgtgcc
tgcgccgaccccggcgccgatgcgctgctgcgggtcgccctggctacccgcagcctgcac
ctggactgggcgaccctggaacgattgaaccaggacgaactgttctgggaacggatggtc
ctgcgcttccgcgactatcgccggtcctggcaggcccagggcgtattgccgatgctgcgg
cgcctgctcgccgacttcgaactgccggcgcgcctgctgcggcatgccgatggcgagcgc
agcctgaccaacctgctgcacctggccgagtggctgcagcgcgcggcggtggaactggac
ggtgagcacgcgctgatccgccatctggccgagcaggtgcagagtccggggagcgaagag
atcctccgcctggaaagcgacgccgacctgatcaaggtggtgaccatccacaagtccaag
gggctggaataccccttggtgctgctgcccttcatctgcagctggagggagctggacggc
aacagcggcgcgccggcgagtttccacgaggatggcgctgcagggcgggtcatcgagctg
gcgcggcgcaaggagcaggctgcgcgggcctacgagcaggccaacgacgagcgcctcggc
gaagacatgcgcctgctctacgtggccctgacccgcgcccgccattcggtgtggctgggc
atcgcgccgctggtggcgagcaacagcaagtcgccggagttgcacaagggggccctgggc
tacctgcttgccggcggcgcgaccatcggcagcgatggcctcggacaatgcctcgccgcg
ttgcgcggcgagtgccgggagattgtcgtcgagccggcccccgaggcggacgccgaacgc
tatgtcgcagggcgcggccagggccttgggcaggcccgcgaaacccgccgcagcagccgc
gagaagtggtgggtcgccagctattccggcctgcaattgcaggcctccgccgggctggac
gatgacgaggtgttggagagcgacgaatcgcaggagccgatcagcgccgaggaagccacc
ttccacgaagaaggccgttccgccgaacagccgccggtcgcgcacaccagcgagatgcgc
gacgacctgcatcgcttcccgcgcggaccggctcccggcaccttcctccacgggctgctc
gaatgggccggccgcgaaggcttcgatgtggcgcgcgccgatgcccagcggcgccgcgaa
ctggtcgcgcgacgctgcgatctgcgtggctggaaggactgggccgaaccgctcgacctg
tggctggaacagtatctcgccgaaccgctgcgctggcccggtggcgaaaccagcctggcc
gggctcgtcgcctaccaggtggaaatggagttctggttcgccacccaccaggtccaggcc
gaggcgatcgacgccctggtccggcgccataccctcggcggcgcggcgcgtccggcgctg
gcgccgaccctgctgaacggcatgttcaagggcttcgtcgacctggtcttcgagcaccag
gggcgtttctacgtggccgactacaagtccaactggctgggcgccgacgatggcgcctac
agcccggaagcgatgaccgccgcggtgctggagaaccgttatgacctgcagtacgtgttg
tacctgctggccctgcaccggcagttgaaggcgcgcctgcccgactacgactacgaccgc
cacatgggcggcgccgtgtacctgttcctccgcggcgcccgcgcggcgacccagggcctg
cacttcgagcgcccgccgcgggaactgatcgaacgcctggacgcgctgttcagcggccag
ccgggagccgagcgatga
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